DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk9 and SSN3

DIOPT Version :10

Sequence 1:NP_477226.2 Gene:Cdk9 / 37586 FlyBaseID:FBgn0019949 Length:404 Species:Drosophila melanogaster
Sequence 2:NP_015283.1 Gene:SSN3 / 856065 SGDID:S000005963 Length:555 Species:Saccharomyces cerevisiae


Alignment Length:461 Identity:122/461 - (26%)
Similarity:192/461 - (41%) Gaps:140/461 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 KYEKVAKIGQGTFGEVFKARE-------------------------------------------- 69
            |||.:..|..||:|:|:||:.                                            
Yeast    74 KYEVIGYIAAGTYGKVYKAKRQINSGTNSANGSSLNGTNAKIPQFDSTQPKSSSSMDMQANTNAL 138

  Fly    70 ----------------------------------KKGNKKFVAMKKVLMDNEKE--------GFP 92
                                              ||....|.|:||  ...||:        |..
Yeast   139 RRNLLKDEGVTPGRIRTTREDVSPHYNSQKQTLIKKPLTVFYAIKK--FKTEKDGVEQLHYTGIS 201

  Fly    93 ITALREIRILQLLKHENVVNLIEICRTKATATNGYRSTFYLVFDFCEHDLAGLL---SNMNVKFS 154
            .:|.||:.:.:.|.::::..|:||...        |...::|:::.||||..::   |:...:..
Yeast   202 QSACREMALCRELHNKHLTTLVEIFLE--------RKCVHMVYEYAEHDLLQIIHFHSHPEKRMI 258

  Fly   155 LGE-IKKVMQQLLNGLYYIHSNKILHRDMKAANVLITKHGILKLADFGLARAFSIPKNESKNRYT 218
            ... ::.:|.|||:|:.|:|.|.:||||:|.||:::|..|.:|:.|.||||.|   .|..:..||
Yeast   259 PPRMVRSIMWQLLDGVSYLHQNWVLHRDLKPANIMVTIDGCVKIGDLGLARKF---HNMLQTLYT 320

  Fly   219 NR--VVTLWYRPPELLLGDRNYGPPVDMWGAGCIMAEMWTRSPIMQGNT-----------EQQQL 270
            ..  |||:|||.||||||.|:|.|.||:|..|||.||:....||.:|..           :..||
Yeast   321 GDKVVVTIWYRAPELLLGARHYTPAVDLWSVGCIFAELIGLQPIFKGEEAKLDSKKTVPFQVNQL 385

  Fly   271 TFISQLCGSFTPD--VWPGVEELELYKSI-ELPKNQKRRVKERLRPYV-----KDQTGCDLLDKL 327
            ..|.::.|  |||  :||.:|:...|..| :.||     .::.|..:.     :|:....||..|
Yeast   386 QRILEVLG--TPDQKIWPYLEKYPEYDQITKFPK-----YRDNLATWYHSAGGRDKHALSLLYHL 443

  Fly   328 LTLDPKKRIDADTALNHDFFWTDPMPSDLSKMLSQHLQSMFEYLAQPRRSNQMRNYHQQLTTMNQ 392
            |..||.|||||..||.|.:|....:|..         :::||.|.....:.::......:..:..
Yeast   444 LNYDPIKRIDAFNALEHKYFTESDIPVS---------ENVFEGLTYKYPARRIHTNDNDIMNLGS 499

  Fly   393 KPQDNS 398
            :.::|:
Yeast   500 RTKNNT 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk9NP_477226.2 STKc_CDK9 37..347 CDD:270848 116/408 (28%)
SSN3NP_015283.1 STKc_CDK8_like 74..463 CDD:270834 116/408 (28%)

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