DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rad50 and rad50

DIOPT Version :10

Sequence 1:NP_726199.3 Gene:rad50 / 37564 FlyBaseID:FBgn0034728 Length:1318 Species:Drosophila melanogaster
Sequence 2:XP_696859.4 Gene:rad50 / 553029 ZFINID:ZDB-GENE-050506-110 Length:1312 Species:Danio rerio


Alignment Length:1361 Identity:402/1361 - (29%)
Similarity:723/1361 - (53%) Gaps:121/1361 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSIESLSIQGIRSFGTYADDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTGECPPGSDRGK 65
            ||.||.:||.|:||||....|.|.|.|.||:|:::|.||.||||::|||||..:|:.|||| :|.
Zfish     1 MSKIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPGS-KGN 64

  Fly    66 SFVHDPKIFGLNEVLAQIKMQVRDRRGAQVSICRTMKVSKKRNKMSFETMDSTINFLTGAGQSKR 130
            :||||||.....:|.|||::|.||..|..|::.|:|:.::|..|..|:|::..|.      :.|.
Zfish    65 TFVHDPKDAHETDVRAQIRLQFRDVNGDAVAVQRSMQCTQKGKKTEFKTLEGVIT------RIKH 123

  Fly   131 EKQDSLSGRSVDIDVAISDFMGVSKAIINNVLFCHQEDSSWPLDESKKLKEKFDAIFGITEYNKA 195
            .::.|||.:..:||..:...:|||:|::|:|:|||||:|:|||.|.|.||:|||.||..|.|.|.
Zfish   124 GEKVSLSSKCAEIDREMISSLGVSRAVLNHVIFCHQEESNWPLSEGKALKQKFDEIFSATRYIKV 188

  Fly   196 LDKIIKLRKEAMEELKIKEANIKHVAYLKQE----MEVKTLNLQKAQRKCDAIKAQCSECEEEMK 256
            |:.:..||::....:|..:..:|   ||||.    .|::.| |...:.:..:.|...:..|.::.
Zfish   189 LETLRTLRQKQTNTVKSCQMELK---YLKQNKDKAQEIREL-LSTKETQLASSKESVNRIEGQID 249

  Fly   257 PIEARLVEIRNVEFEIGKYQAQKVE-----MDTKHKNCKDQISTLTLKIKKPFRGTLDELDQEIS 316
            |:|.||   .::|..:||  ..|::     :|::.|..:|....|..|:::.|:|:.|:|.....
Zfish   250 PLERRL---NDIESSLGK--VMKLDNDIKALDSRKKQMEDDNRELEEKMEQVFQGSDDQLQDMYQ 309

  Fly   317 NFDQRMLEMRQKRTEVEGDL----------SQIKRSSVAEQEKLGTQDRKHCLAKQRHQSELACR 371
            |..:.:.|..::..|.:.:|          ::||...:.||.:|..:..:|....::..:::...
Zfish   310 NHQRTVKEKEKRLVECQRELERAGRECQRMNRIKSELLVEQGRLQLEADRHTQNIKKRDTQVKTL 374

  Fly   372 AQLL------------KRVKEFCRELHIPIDCDLVEQPEKMGEVLRDIEAMIITKHCEITEIVEQ 424
            |..|            ::::.|.|::...:|              :|.||:..|.|        .
Zfish   375 ASFLELEGYDRTPLSERQLQSFYRQIKERLD--------------QDSEALNQTMH--------D 417

  Fly   425 NEKADRSRQVKIDELRIELTKSEQSVTAQEKQRESSKRESETLGVEIKKIETSMQDLKKLEKEIN 489
            .::.:..:|..||:||.:.|..|:::..::..:...::|.:.:..:::|:|.|...|::|:.|:.
Zfish   418 MQQKETQKQHNIDDLRDKKTGLERTIELKKDLQAKKQQELKNIKSDLQKLEGSSNRLQELDTELQ 482

  Fly   490 EVNELYESATKNIDQQAIK---DAIARKKASIAENQIQFKKLDEQLTFLGSMAKLVAECSLKQKE 551
            :.....::|.:.....::|   ..:.::||.:.:.|   :|||:::..|.:.....|:..:.:|.
Zfish   483 KAERELDNAVQACTVDSLKVEVTELLKEKAQLDQAQ---RKLDQEMEMLNTHTTARAQMDMMKKT 544

  Fly   552 LDKKNQEVHRVRSRHSDHFGKLFKE-PITCNYRRSMQVVYEKLRREIQELNEKANTQKLKEQSYE 615
            ...|.::|.:::|||::....|... |   |.:.....:|.| .|||:...|:......:..|.|
Zfish   545 KMDKEEQVRKIKSRHNEELVSLLGHFP---NKKELEDWIYSK-SREIKSTREQITKMNKELASGE 605

  Fly   616 IKRKNLISDISRMEKELKDSEELIYQKCRSTPYDDLLERSKTTISKLQFDHGALKSSEALYKKYI 680
            .|:.:..::|.|.|::|...||.::..|.|..:...|.:.:..:.|.......|..:.|:|.::|
Zfish   606 QKKSHYTAEIKRKEEQLAKYEERLFNVCGSQDFQSDLSKLEDELEKCSKQRAMLAGATAVYSQFI 670

  Fly   681 QKMDEE--PSCPLCHHNMTSD-EACDLTSELTDEIQKLPDNITRAEKALKAEQIKYENLLQLKPT 742
            .::.||  |.||:|.....|: |..|:.:::..:::.:||.:...|..||.::.:.:.::.|||.
Zfish   671 SQLTEEGDPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEHDLKRKERRRDEMMTLKPI 735

  Fly   743 ILKVKELKD-SLPQKKEELKKV----EELLGDSVSEYETLI-ALIGEPTHNMELANSMMGDMSLL 801
            ...:.||:: .||:.:.:|::|    |:|.|| :.|.|||: .|:.|.    |.|.:.:.|:||:
Zfish   736 RQSLVELQEKELPELRNQLQRVNRDIEKLKGD-IEEQETLLCTLVSEE----ETAKACLQDISLM 795

  Fly   802 DEALKDSARLTKDLDLQKGQLPA---SYDSSVSMDDLQAEKSKVSKELETERKELESAQNAVQQQ 863
            |....|    .||::.:..|..|   ..|.|.:|..:..||.:....|:|...::|..:..:|.|
Zfish   796 DRFQLD----LKDVERKIAQHAAKLQGVDLSRTMQQVSQEKQETQHRLDTTSSKIELKRKLIQDQ 856

  Fly   864 MDALNRLREKKNSLKDRQIHLREGLQSLPQLKERLEKLNSFLTTVASEISELKAKIQPLKLNLRA 928
            .:.:..||...|.::..::.:...:|...||:|:..:.::.:.|:..:|.:.|.:..||...|..
Zfish   857 QEQIQALRSSVNEIRGEKLQISSNMQKRQQLEEQCVEFSTEIQTLHRDIRDAKEQASPLAATLEK 921

  Fly   929 AIEEKE-----RLKKSE--SEKLAQLNSKYNSYKSTDHDIQRLNKEAEDYAKLDLRNEIKKLDEI 986
            ..:||:     |.||.|  .||:..:..|..:....:.:|.:..:|.:|..|.....|::::|: 
Zfish   922 LQQEKQDLVERRRKKQEEGQEKINAIKEKMKNITLFEKEITKYIEEGKDSYKEQKETELQEMDK- 985

  Fly   987 IMASKDKLRKLEAEISLKTDELETIKTECSNQQTVERDLKDNRELKQLEDKEAKLRESCQVLDKQ 1051
                  :|.:.|.:......::..|:.:...|:..||.|:||..|::..::..::....:.|.|:
Zfish   986 ------QLHEAEKQREKTNKDMGNIRQDIDTQKVQERWLQDNLTLRKRVEELKEVSRKREALIKE 1044

  Fly  1052 LGNLDFHSVSKEKVNLTKQRDKATVRKGELLGQLGEIHSQVNKLQREIDEPRFKESLKNFRKANY 1116
            :||:....:..|:..:.::.:.....:...||:......::.:.::|::|.::..:...:|....
Zfish  1045 MGNMQVLQLRNERREVERKLEDLKKNRSVALGRQKGYEDEILRFRKELNEDQYCRAEDLYRDKMI 1109

  Fly  1117 EIEVTRLCIEDLGQYRLALEWALIQFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSSDA 1181
            .:..|.|..:||..|..||:..:::|||.|||.||::||:.||..|||.||:|:::::| |..:|
Zfish  1110 VMRTTELANKDLDIYYKALDQTIMRFHSMKMEEINKIIRDLWRSTYRGQDIEYVEIRSD-VDENA 1173

  Fly  1182 SAD-RRKTYNYRVVQSKNYSEIEMRGRCSAGQRVLASLIIRLALAETFSSNCGVLALDEPTTNLD 1245
            ||. :|:|||||||..|..:.::|||||||||:|||||||||||||||..|||:|||||||||||
Zfish  1174 SAGVKRRTYNYRVVMVKGDAALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLD 1238

  Fly  1246 RANINSLCEALNCIVEERQSQSNFMLIIITHDENFVSSLGK---ITSYHRVFRN-EECKSV 1302
            |.||.||..||..|::.|..|.||.|::|||||:||..||:   :..::|:.:| ::|..:
Zfish  1239 RENIESLAHALVEIIKSRSRQRNFQLLVITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEI 1299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rad50NP_726199.3 rad50 2..1295 CDD:129694 399/1350 (30%)
rad50XP_696859.4 rad50 2..1312 CDD:129694 401/1360 (29%)

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