DRSC/TRiP Functional Genomics Resources

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Protein Alignment wrapper and Lsamp

DIOPT Version :10

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_001401926.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:320 Identity:88/320 - (27%)
Similarity:133/320 - (41%) Gaps:56/320 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LDFNNDLENSQKFKSIPTTVKTYENDTVQLPCTLNTPFRYVRW-HRDDVALVDSRHPELPPPDRI 88
            :|||...:|        .||:  :.||..|.|.:......|.| :|..:.........|.|  |:
  Rat    49 VDFNRGTDN--------ITVR--QGDTAILRCVVEDKNSKVAWLNRSGIIFAGHDKWSLDP--RV 101

  Fly    89 MLWPNG----SLQVANVQSSDTGDYYCEMNSDSGHVVQQHAIEVQLAPQVLIEPSDLTEQRIGAI 149
            .|....    ||::..|...|.|.|.|.:.:.......|..:.||:.|::....||:|... |:.
  Rat   102 ELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNE-GSN 165

  Fly   150 FEVVCEAQGVPQPVITWRLNGNVIQPQSNTGNRQSLILEIK--SRNQAGLIECVASNGVGEPAVA 212
            ..:||.|.|.|:||||||    .:.|.......:...|||.  :|.|:|..||.|:|.|....|.
  Rat   166 VTLVCMANGRPEPVITWR----HLTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVK 226

  Fly   213 NVYLHVLFSPEVSIPQPVVYTKLGSRAHLECIVEAAPAATVKWFH--------HGLPVALGAHST 269
            .|.:.|.:.|.::..:....| .|.:|.|:|...|.||...:|:.        :||.:    .||
  Rat   227 QVKVTVNYPPTITESKSNEAT-TGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEI----KST 286

  Fly   270 THESELQ-TNRSVDHYVNAVRHMLVVKSVRNADMGQYECRASNQISVKSGSVELTGRPMP 328
            ..:|.|. ||.:.:||                  |.|.|.|:|::.|.:.|:.|..|.:|
  Rat   287 EGQSSLTVTNVTEEHY------------------GNYTCVAANKLGVTNASLVLFKRVLP 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 IG_like 41..118 CDD:214653 20/81 (25%)
Ig strand B 52..56 CDD:409353 1/3 (33%)
Ig strand C 64..68 CDD:409353 2/4 (50%)
Ig strand E 94..98 CDD:409353 2/7 (29%)
Ig strand F 108..113 CDD:409353 2/4 (50%)
Ig strand G 122..125 CDD:409353 1/2 (50%)
Ig 133..219 CDD:472250 29/87 (33%)
Ig strand B 150..154 CDD:409353 0/3 (0%)
Ig strand C 163..167 CDD:409353 3/3 (100%)
Ig strand E 183..187 CDD:409353 0/3 (0%)
Ig strand F 197..202 CDD:409353 2/4 (50%)
Ig strand G 211..214 CDD:409353 1/2 (50%)
Ig_3 222..311 CDD:464046 24/97 (25%)
FN3 339..431 CDD:238020
LsampNP_001401926.1 Ig 55..145 CDD:472250 22/101 (22%)
Ig strand B 66..70 CDD:409382 1/3 (33%)
Ig strand C 78..82 CDD:409382 1/3 (33%)
Ig strand E 111..115 CDD:409382 2/3 (67%)
Ig strand F 125..130 CDD:409382 2/4 (50%)
Ig strand G 138..141 CDD:409382 0/2 (0%)
Ig_3 148..218 CDD:464046 26/74 (35%)
Ig_3 235..311 CDD:464046 24/98 (24%)
Blue background indicates that the domain is not in the aligned region.

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