DRSC/TRiP Functional Genomics Resources

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Protein Alignment LBR and lbr

DIOPT Version :10

Sequence 1:NP_726114.1 Gene:LBR / 37482 FlyBaseID:FBgn0034657 Length:741 Species:Drosophila melanogaster
Sequence 2:XP_031757390.1 Gene:lbr / 100145693 XenbaseID:XB-GENE-979300 Length:1069 Species:Xenopus tropicalis


Alignment Length:522 Identity:140/522 - (26%)
Similarity:236/522 - (45%) Gaps:78/522 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 DEKSSKRSYSTGEE----DIDEEDELEEDQFRSFNVTRKSATP---------------------A 295
            ||:..:..|....:    .|...:.|||::.|:..|.|.|.:|                     .
 Frog   590 DEQRCREKYGPDWDKYCKHIKSVELLEEEEERNEKVLRYSLSPQKESSIPKGIVLTDSGPTESLP 654

  Fly   296 EISCRQLKAPR-EFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHLNLGILLDVNYLTRQVF 359
            |.:.:..:.|: .|||.:|..||::..|..:|.|..:|...:|..:..|.|        |..|||
 Frog   655 ETAEKNAENPKLAFGGTVGCLLFMICFPALLYCLLVACGPHSASVYPSLEL--------LDAQVF 711

  Fly   360 QPRVVGAFAAYQVVVFLLVALLPGRRV-------HLTRETYKFNCLAV-SLTLLIASGVAEYLKY 416
                 |.|..: :::...:|:||..:|       :.:|..|:.|.:.| .||...|:.:..|.|.
 Frog   712 -----GFFVLW-ILLQASLAILPLGKVVDGVQLGNGSRLKYRMNGIHVFFLTAATAAAMMYYYKI 770

  Fly   417 PVVTFVLRHYLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFALGRQLN 481
            .:: :|..|||:|.....:.:.:.:.:.|    ...|.|..:.|:.. ..:|||:..|.:||::|
 Frog   771 NIL-YVYEHYLQFAASATLFSLLFSVYLY----VRSYRVPNEELSWT-ANSGSFIYKFFMGREIN 829

  Fly   482 PKWLGRVDWKQ-FQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQEGYLYQAKYYWNNVNYDPAT 545
            |: :|.:|.|. |.::|:|::.::     |...:::.:....|..|..|              :.
 Frog   830 PR-IGNLDLKTFFMFQLALISWVL-----INAVMLFAEMEVQGRDEPSL--------------SM 874

  Fly   546 LFSASCLLFYVLDAIIFEHHLSSSFELQHEGYGCLLLLRYAA-TPYLLTAVTKYFYEQRVPISCW 609
            :...|..|.||||......:...|.::..:|:|.||....|| .|:..:....|.....|.:. |
 Frog   875 ILVNSLQLLYVLDGFWNLEYFLMSPDITRDGFGFLLAFGSAAILPFTYSLQAYYLVNNPVDLP-W 938

  Fly   610 YAPLAVAALLSLGLLVKRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYL 674
            .|..|:.||..||.::.|.:.:.|..:|.|...|.|::::|:.|..||:||:||.||:||:||||
 Frog   939 QAACAIVALNLLGFIIYRGANSQKSAFRQNPDDPRFSHLKTLPTSAGSKLLISGWWGFVRRPNYL 1003

  Fly   675 GDIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSWQRYSTQVRSYILPR 739
            |||:..:|...|.......|....: .:||:||.|..|...|.:.:|...|.:|...||..:||.
 Frog  1004 GDIIMGVAWCLPCGFNNMVPYFYAI-FLILILLDRVARDEQRCREKYGPDWDKYCKHVRYRLLPY 1067

  Fly   740 VY 741
            ||
 Frog  1068 VY 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LBRNP_726114.1 ICMT 304..741 CDD:473892 125/447 (28%)
lbrXP_031757390.1 LBR_tudor 1..55 CDD:462808
ICMT 249..610 CDD:473892 3/19 (16%)
ICMT 666..1069 CDD:473892 124/444 (28%)
Blue background indicates that the domain is not in the aligned region.

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