DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and hmgb2b

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001004674.1 Gene:hmgb2b / 447936 ZFINID:ZDB-GENE-040912-122 Length:214 Species:Danio rerio


Alignment Length:112 Identity:43/112 - (38%)
Similarity:65/112 - (58%) Gaps:6/112 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELW--RGLKDKTEWEQKAIKMKEEYNKAV 68
            ||||.||:.::.:|.|..:|.::|...:.:|||:.||||  :..||:..:||||.|::|:|.|.|
Zfish    97 PKRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEV 161

  Fly    69 KEYEANGGTDSGAPKKR----KKAAAKPAKKAKKKESSEEEEEDESE 111
            ..|.|.||.....|.:.    ||:.|:......:.|..|:||:||.|
Zfish   162 AAYRAGGGASKRGPGRPTGSVKKSQAEADDDDDEDEDEEDEEDDEEE 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 26/65 (40%)
hmgb2bNP_001004674.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 95..165 CDD:438795 28/67 (42%)
Blue background indicates that the domain is not in the aligned region.

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