DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and D

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_524066.1 Gene:D / 39570 FlyBaseID:FBgn0000411 Length:382 Species:Drosophila melanogaster


Alignment Length:83 Identity:25/83 - (30%)
Similarity:45/83 - (54%) Gaps:9/83 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAVK 69
            |||::|:|:|....|.||.||||....::|:||.|..|:.|  .:|..:..:|.:::..:.|...
  Fly   143 KRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMKEHP 207

  Fly    70 EYEANGGTDSGAPKKRKK 87
            :|:..       |:::.|
  Fly   208 DYKYR-------PRRKPK 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 21/65 (32%)
DNP_524066.1 HMG-box_SoxB 140..219 CDD:438790 25/83 (30%)

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