DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fem-1 and fem1b

DIOPT Version :9

Sequence 1:NP_611508.1 Gene:Fem-1 / 37344 FlyBaseID:FBgn0034542 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001238770.2 Gene:fem1b / 100488880 XenbaseID:XB-GENE-999856 Length:629 Species:Xenopus tropicalis


Alignment Length:644 Identity:259/644 - (40%)
Similarity:382/644 - (59%) Gaps:33/644 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 LHLAARSGQMLSFVEILNSVSCRAVQTHLVNTNFDQPDGQSLTPLTMAAMMGNVKFVKTLLSHYD 125
            ::.||..|::|:...:|.:.:...::|.|  :...|..||..|||.:||..|:.|.|:.||.||.
 Frog    10 VYKAAAEGRVLTLAALLLNRTEPEIRTLL--STVTQHGGQRSTPLIIAARNGHSKVVRLLLEHYK 72

  Fly   126 VDLDRECNVIYDGMVVYGATALWVAAGMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLD 190
            ||:.:...|.:||.::.||||||.|||.||.::||:||..||.:||.|...|:||||||::||||
 Frog    73 VDVQQTGTVRFDGYIIDGATALWCAAGAGHYEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLD 137

  Fly   191 IVEFLIDNGADVNATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAESGHL 255
            ||.||::|.|:::..|.::|..|||||||||..||:.||:..:..|.:|.|||||||:|||:|||
 Frog   138 IVRFLVENNANISIANKYDNTCLMIAAYKGHTDVVRYLLEQHADPNARAHCGATALHFAAEAGHL 202

  Fly   256 DVVVALLDHGATLKKNELGITPALQAAERLHEDVLEAFIERPELMSLEEQITALELLGATYANDK 320
            |:|..|:...|.:..|..|:||...|||....:|:|..:...: ...:.:|.|||||||::|||:
 Frog   203 DIVRELVKWKAAMVVNGHGMTPLKVAAESCKAEVVELLLAHSD-CDTKSRIEALELLGASFANDR 266

  Fly   321 IKYDVNKAYGYLLRAMQLRYSNPRGVIRKRVQPTVPAYDNWLETENLPELYAIKLNHHSIHMESL 385
            ..|::.|.|.||..||..|:.:|..::.|.|.|.:.||....|.....||.||..|..::|||.|
 Frog   267 ENYNLTKTYQYLYLAMLERFRDPSNILHKEVLPPIEAYGMRTECRTPQELGAIIHNTDALHMEGL 331

  Fly   386 AIRERILGRNNPELPQAIIYRGAVMADQGRFYQCQVLWNYAIDLRMRNNVSVDRDLLRFAQLFAQ 450
            .:||||||.:|.::...|||||||.||..:|.||..||.:|:.||.:.|.:..:|||||||:|:|
 Frog   332 IVRERILGSDNIDVSHPIIYRGAVYADNMQFEQCIKLWLHALQLRQKGNRNTHKDLLRFAQVFSQ 396

  Fly   451 ILRVEN--HNLTLDHVLPVLAKCQ-QEIENNKFKIKE-AKPNACPSLWQDQNNQ-NCITALYLIK 510
            ::.:..  .:..::|||    :|. .|||....:::. .:|:|..:|   :|:: |..|.|||:.
 Frog   397 MIHLNEPVKSWDVEHVL----ECSVLEIERGISRVQNPQEPDAHSAL---ENHECNLYTFLYLVC 454

  Fly   511 IVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTLLHIAVNGVMPVDEFYTNEMCRFP 575
            |.|.....:::|....:.|.:|       :..|.|.:||.||||:||:...|||:|:||::|.||
 Frog   455 ISTKTRCSEEEQPRINKQIYRL-------VHLDPRTRDGCTLLHLAVDSGTPVDDFHTNDVCSFP 512

  Fly   576 CYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTTQDRQAEMARILELFVEAGAHLDAVNAAGQ 640
            ....|.:|:.|||:|.|||...|:|||::|.......|.....|.|:.| ||||||.|..|...:
 Frog   513 SAPVAKLLIDCGANVNAVDQMGNSPLHVIVQYNRPISDFLTLHAIIISL-VEAGAHPDMTNKEKK 576

  Fly   641 T----AATACKLPILANRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQMH 695
            |    :.|.....:|..::      ..||||||||::..:.:.::..||..||.|::.|
 Frog   577 TPLDRSTTGVSEILLKTQM------KLSLKCLAARAVRLHNIKYQNQIPRTLEEFVEFH 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fem-1NP_611508.1 ANK 61..196 CDD:238125 61/134 (46%)
ANK repeat 103..129 CDD:293786 14/25 (56%)
Ank_2 105..206 CDD:289560 52/100 (52%)
ANK 142..262 CDD:238125 69/119 (58%)
ANK repeat 142..173 CDD:293786 19/30 (63%)
ANK repeat 178..206 CDD:293786 16/27 (59%)
Ank_2 180..266 CDD:289560 48/85 (56%)
ANK repeat 208..239 CDD:293786 15/30 (50%)
ANK repeat 241..266 CDD:293786 16/24 (67%)
Ank_4 244..294 CDD:290365 23/49 (47%)
ANK 548..685 CDD:238125 54/140 (39%)
ANK repeat 548..594 CDD:293786 24/45 (53%)
ANK repeat 596..636 CDD:293786 16/39 (41%)
fem1bNP_001238770.2 Ank_2 13..119 CDD:403870 45/107 (42%)
ANK repeat 50..87 CDD:293786 17/36 (47%)
ANK repeat 89..120 CDD:293786 19/30 (63%)
Ank_2 94..185 CDD:403870 49/90 (54%)
ANK repeat 122..153 CDD:293786 17/30 (57%)
ANK repeat 155..185 CDD:293786 15/29 (52%)
Ank_2 160..243 CDD:403870 41/82 (50%)
ANK repeat 188..213 CDD:293786 16/24 (67%)
Ank_2 380..>589 CDD:423045 78/223 (35%)
PHA03095 478..>580 CDD:222980 46/102 (45%)
ANK repeat 485..531 CDD:293786 24/45 (53%)
ANK repeat 533..572 CDD:293786 16/39 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 141 1.000 Domainoid score I4688
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H7714
Inparanoid 1 1.050 423 1.000 Inparanoid score I1743
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133963at33208
OrthoFinder 1 1.000 - - FOG0008196
OrthoInspector 1 1.000 - - oto105361
Panther 1 1.100 - - LDO PTHR24173
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4569
SonicParanoid 1 1.000 - - X856
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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