Protein Alignment sm and Hnrnpl

DIOPT Version :10

• Sequence 1: NP_001246428.1
• Gene: sm / 37254
• FlyBaseID: FBgn0003435
• Length: 552
• Species: Drosophila melanogaster
• Sequence 2: NP_001128232.1
• Gene: Hnrnpl / 80846
• RGDID: 71059
• Length: 623
• Species: Rattus norvegicus
• Alignment Length: 612
• Identity: 209/612 - (34%)
• Similarity: 292/612 - (47%)
• Gaps: 157/612 - (25%)

  Fly     5 GASNGSGASGAGGG------------------------------------GATIVVTEGPQNKKI 33
            |...||||:|.|||                                    |....|...|:.::.
  Rat    73 GGGGGSGAAGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQA 137

  Fly    34 R----------TGVQQPGENDVHM--HARSTPQQNQQQALMNKSNDDLRRKRPETTRPNHILLFT 86
            .          ..|....:|.:::  |.........|:......:||.|       ..|.:||||
  Rat   138 LVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR-------SVNSVLLFT 195

  Fly    87 IINPFYPITVDVLHKICHPHGQVLRIVIFKKNGVQAMVEFDNLDAATRARENLNGADIYAGCCTL 151
            |:||.|.||.|||:.||:|.|.|.|||||:|||||||||||::.:|.||:.:|||||||:|||||
  Rat   196 ILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTL 260

  Fly   152 KIDYAKPEKLNVYKNEPDTSWDYTLSTVKEIGN-GRSPLLQEPLYVATLSTPQQHVSHQHHHHLR 215
            ||:||||.:|||:||:.|| ||||...:...|: |.:|
  Rat   261 KIEYAKPTRLNVFKNDQDT-WDYTNPNLSGQGDPGSNP--------------------------- 297

  Fly   216 QQQQQQHQQQAPQQQPHPQHLHH--------QQQLVAPAQSHNLYQFKEP----PLLGPGAAFPP 268
                .:.|:|.|....||.....        .:...|||:       :.|    |:|....:.||
  Rat   298 ----NKRQRQPPLLGDHPAEYGEGRGFPSVDSRGSCAPAR-------RPPRKFSPVLPLFPSHPP 351

  Fly   269 FGAPE--YHT--------TTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQ----------- 312
             |.|.  ||:        ..|.:::|..:.|      |.|  ..|..|..:.||
  Rat   352 -GGPHGGYHSHYHDEGYGPPPPHYEGRRMGP------PVG--GHRRGPSRYGPQYGHPPPPPPPP 407

  Fly   313 ---GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQH 374
               ..|...|:||||||....|.|::||:.||||||.::||:|:|.|.|||:|.|..||:|.:.|
  Rat   408 DYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITH 472

  Fly   375 LNNIPVGTGGKIQIAFSKQNFLSEVINPFLLP-------DHSPSFKEYTGSKNNRFLSPAQASKN 432
            ||| ....|.|:.:..|||        |.::|       |.|.|:|:::.|:||||.:|.||:||
  Rat   473 LNN-NFMFGQKMNVCVSKQ--------PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN 528

  Fly   433 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVP-ATSVRLFPLKTERSSSGLIEFSNISQAVLAI 496
            |||.||.:|||||.|..:||:....|.:...|. .|||::|..|:|||||||:|:.:.|.|:..:
  Rat   529 RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 593

  Fly   497 MKCNHLPIEGKGTKFPFIMKLCFSSSK 523
            ...||..::.....:|:.:|||||:::
  Rat   594 GFLNHYQMKNPNGPYPYTLKLCFSTAQ 620

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sm	NP_001246428.1	hnRNP-L_PTB	45..522	CDD:273733	195/523 (37%)
Hnrnpl	NP_001128232.1	hnRNP-L_PTB	97..621	CDD:273733	200/588 (34%)