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Protein Alignment CG11961 and Folh1

DIOPT Version :9

Sequence 1:	NP_001246418.1	Gene:	CG11961 / 37221	FlyBaseID:	FBgn0034436	Length:	891	Species:	Drosophila melanogaster
Sequence 2:	NP_058050.3	Gene:	Folh1 / 53320	MGIID:	1858193	Length:	752	Species:	Mus musculus

Alignment Length:	324	Identity:	69/324 - (21%)
Similarity:	116/324 - (35%)	Gaps:	80/324 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   128 SQKMQKIRSGTA-------NDIEVDVQVASG-----------SYVH--WSMVNMYQSIQNIVVKI 172
            :||:.:...|.|       ..::|...|..|           .::|  ..:..:|..|..:...:
Mouse   304 AQKLLEHMGGPAPPDSSWKGGLKVPYNVGPGFAGNFSTQKVKMHIHSYTKVTRIYNVIGTLKGAL 368

  Fly   173 SPKNTNSTTYLLVNSHYDSVPAGPGAGDDGSMVATMMEVLR---VLAKSDKPLKNPVVFLFNGAE 234
            .|..     |:::..|.|:...  |..|..|..|.:.|::|   .|.|..:..:..::|....||
Mouse   369 EPDR-----YVILGGHRDAWVF--GGIDPQSGAAVVHEIVRSFGTLKKKGRRPRRTILFASWDAE 426

  Fly   235 ENPLQAS------HAFITQHKWAKYCKALINLDSCGNGGREILFQSGPNHPWLMKNYRRAIKHPY 293
            |..|..|      |:.:.|.:...|    ||.||...|...:.....|....|:.|..:.::.|.
Mouse   427 EFGLLGSTEWAEEHSRLLQERGVAY----INADSSIEGNYTLRVDCTPLMYSLVYNLTKELQSPD 487

  Fly   294 ASTMGEELFQH--------NFI--------PSDTDFRIFRDHGSVPGLDMAYTYNGF-------- 334
            ....|:.|:..        .||        .|..||.:|.....:......||.|..
Mouse   488 EGFEGKSLYDSWKEKSPSPEFIGMPRISKLGSGNDFEVFFQRLGIASGRARYTKNWKTNKVSSYP 552

  Fly   335 VYHTRHDKAEIF-----PRGSFQHTGDNLL-ALVRQIANS---P-EIENSA----KYAKGHTIY 384
            :||:.::..|:.     |...:..|...:. |:|.::|||   | :.::.|    |||  .|||
Mouse   553 LYHSVYETYELVVKFYDPTFKYHLTVAQVRGAMVFELANSIVLPFDCQSYAVALKKYA--DTIY 614

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.