DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment POSH and sh3rf1

DIOPT Version :10

Sequence 1:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster
Sequence 2:NP_001038952.2 Gene:sh3rf1 / 556523 ZFINID:ZDB-GENE-030131-6288 Length:880 Species:Danio rerio


Alignment Length:949 Identity:291/949 - (30%)
Similarity:430/949 - (45%) Gaps:198/949 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDEHTLNDLLECSVCLERLDTTSKVLPCQHTFCRKCLQDIVASQHKLRCPECRILVSCKIDELPP 65
            |||..|.|||||.|||||||.|:|||||||||||:||..||.|:.:|||||||.||...:||||.
Zfish    14 MDESALLDLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPECRTLVESGVDELPS 78

  Fly    66 NVLLMRILEGMKQ---------------NAAAGKGEEKGEETETQPERAKPQPPAESVAPPDNQL 115
            |:||:|:|:|:||               :|.||...:....::..|            .|...|.
Zfish    79 NILLVRLLDGIKQRPRRTGSVHGTCANGSAVAGVRAQGAGGSQRDP------------GPTGGQS 131

  Fly   116 LQLQSHQQSHQPARHKQRRFLLPHAYALFDFASGEATDLKFKKGDLILIKHRIDNNWFVGQANGQ 180
            .::|:   ...|.|...:   ||.|.||:::...|..||||.|||:|:::.::|.||:.|:..|.
Zfish   132 QRVQA---KSTPVRGVPQ---LPCAKALYNYDGKEPGDLKFSKGDIIILRRQVDENWYHGEMGGV 190

  Fly   181 EGTFPINYVKVSVPLPM--PQCIAMYDFKMGPND-EEGCLEFKKSTVIQVMRRVDHNWAEGRIGQ 242
            .|.||.|:|:|..|||.  |||.|:|||::...: ::.||.|.|..::.|:||||.|||||.:|.
Zfish   191 HGFFPTNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDENWAEGMLGD 255

  Fly   243 TIGIFPIAFVELNAAAKKLLDSGLHTHPFCHPPKQQGQRALPPVPVIDPTVVTESSSG----SSN 303
            .||||||::||.|:||::|::       ...|.:..|..:..|         :.||||    .|.
Zfish   256 KIGIFPISYVEFNSAARQLIE-------LDKPSEGGGDSSEGP---------SSSSSGPQANGSQ 304

  Fly   304 STPG-SSNSSSTSSSNNCSPNHQISLPNTPQH--VVASGSASVRFRDKGAKEKRHSLNALLGGGA 365
            ..|| ..||....|..:.:.:|:..|...||.  :..||...:...:..|..:...|:..|...|
Zfish   305 KAPGEKKNSKKRHSFTSLTMSHKPCLAPPPQRHSMEISGPVLISSSNPTAAARIGELSGGLSSSA 369

  Fly   366 P-------LSLLQTNRHS-----AEILSLPHELSRLEVSSSTALKPTSAP----QTSRVLKTTVQ 414
            |       ..|:.|...|     |.:.:.|.|.|...:... ||.|...|    |:|.|....:.
Zfish   370 PSQVHICTTGLIVTPPPSSPVTTATVFTFPPETSYASIPVD-ALPPPPPPPPQSQSSVVGAAALN 433

  Fly   415 QQMQPN----------LPWGYLALFPYKPRQTDELELKKGCVYIVTERCVDGWFKGKNW-LDITG 468
            ...:|:          .|..|:|:|||.||:.|||||:||.:::|.|||.||||||.:. ....|
Zfish   434 AGQRPSPAAGDQSGRQRPTVYVAMFPYSPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIG 498

  Fly   469 VFPGNYLTP----LRARDQQQLMHQWKYVPQNADAQMAQVQQHPVAPDVRLNNMLSMQPPDLPPR 529
            ||||||::|    :....|.:       ||....:|..: ....|:|...|.:|...:|..:.|.
Zfish   499 VFPGNYMSPVSRTVSGSSQPK-------VPLTLCSQAGR-GVTIVSPSSALGSMDLSKPLPVCPN 555

  Fly   530 QQQATATTTSCSVWSKPVEAL-FSRKSEPKPETATASTTSSSSSGAVGLMRRLTHMKTRSKSPGA 593
                  .|.|||:.:..|.|. ......||                  ::..:|...|.:::   
Zfish   556 ------ATPSCSLPAAVVTAAHLPTGQHPK------------------VLMHVTSQMTVNQA--- 593

  Fly   594 SLQQVPKEAISTNVEFTTN-PSAKLHPV--HVRSGSCPSQ---LQHSQPLNETPAAKTA------ 646
                  :.|:.|.|..:.: |:|.:.|:  |......||.   ||.|..||.:....:|      
Zfish   594 ------RNAVRTAVSHSQDRPTAAVTPIQSHNPVAYLPSTAVVLQASPVLNSSSGCSSARVGVAL 652

  Fly   647 -AQQQQFLPKQLPSASTNS------------VSYGSQRVKGSKERPHLICARQSLDA-----ATF 693
             .......|..:.:||.::            |:.||.:..|:... |.:..|...|.     ...
Zfish   653 GCAAASLTPPNVSAASLDTDAMRPVPMVALPVNAGSTKPLGAASN-HGVACRLDKDCKREKKGLL 716

  Fly   694 RSMYNNAASPPPPTTSVAPAVYAGGQQQV---IPGGGAQSQL-------HANMI--------IAP 740
            :.:.|.....|.|.:|  |.:.|  :|.|   :|.|....::       |...|        ::.
Zfish   717 KLLSNKKKLRPSPPSS--PTLEA--EQSVSMELPQGAVGPEMALSGSAGHNGRIGACPMDSELSM 777

  Fly   741 SHRKSHSLDASHVLSPSSNMI---------TEAAIKASATTKSPYCTRESRFRCIVPYPPNSDIE 796
            |...|::...:|..||..|..         ..:.:......:...|   .|:|.:|.|||.|:.|
Zfish   778 SSSSSNTDAVTHRSSPQDNTAPIAPPPRQPCSSLLSMQHDGRPIVC---ERYRVVVSYPPQSEAE 839

  Fly   797 LELHLGDIIYVQRKQKNGWYKGTHARTHKTGLFPASFVE 835
            |||..|||::|.:|:::||:|||..|..:|||||.|||:
Zfish   840 LELKEGDIVFVHKKREDGWFKGTLQRNGRTGLFPGSFVD 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POSHNP_523776.1 RAD18 6..>113 CDD:227719 56/121 (46%)
RING-HC_SH3RF3 8..53 CDD:438408 34/44 (77%)
SH3 139..191 CDD:473055 22/51 (43%)
SH3_SH3RF_2 199..251 CDD:212721 27/52 (52%)
SH3_SH3RF_3 424..477 CDD:212717 31/53 (58%)
SH3_SH3RF_C 782..836 CDD:212719 30/54 (56%)
sh3rf1NP_001038952.2 RING-HC_SH3RF1 21..68 CDD:438406 36/46 (78%)
SH3_SH3RF1_1 148..201 CDD:212860 23/52 (44%)
SH3_SH3RF1_2 211..265 CDD:212863 27/53 (51%)
SH3_SH3RF1_3 453..507 CDD:212859 31/53 (58%)
SH3_SH3RF_C 825..879 CDD:212719 30/54 (56%)

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