DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4853 and efc25

DIOPT Version :9

Sequence 1:NP_611222.2 Gene:CG4853 / 36974 FlyBaseID:FBgn0034230 Length:709 Species:Drosophila melanogaster
Sequence 2:NP_596123.1 Gene:efc25 / 2540248 PomBaseID:SPBC336.03 Length:987 Species:Schizosaccharomyces pombe


Alignment Length:725 Identity:144/725 - (19%)
Similarity:264/725 - (36%) Gaps:197/725 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EDILNAVES-----LFGKDVKIVDCETSSSLQQEEVLLVNGVPVKLDGLPADDASAIKAALLEGQ 62
            |.|.|.:||     .|.||:.  :||.:::...:...:.......|          :...:...|
pombe   418 EQIFNKLESWDMSIYFDKDLS--ECEQATNFAVQSYFVTKQRCYDL----------LTDLVCSSQ 470

  Fly    63 MPSVEHLNQLLFRAGLAQQPIEVETSLTVKSSLTTTEEVLVSRNGQILDERTVETKENFNHQSHQ 127
            ...:||.|             :..|..|:.:|:....:.|.               ||       
pombe   471 DLMMEHSN-------------DFSTMPTMIASIAVAFQTLF---------------EN------- 500

  Fly   128 KEIWHPVKQQSALARATPENALKYRTTSNSTFASQATDSDERPVDPLGRQLNQTFSNASLMSSSS 192
              :...:|.::||.....|.|.|   ...:.|::..|..|:.|    .||.|:            
pombe   501 --VCDFLKVRAALVDEMQELATK---EFENKFSNANTAKDDEP----ARQTNK------------ 544

  Fly   193 AITGSDQVIGSVSSTTIGDKSSNISSCDSGHDGLFHSVSMSAPWSHPRDTLTDSLYCDIPSSADE 257
               |:.::..|...|.:.:.|                          :||||          ...
pombe   545 ---GTTRISRSSDFTAVSEMS--------------------------KDTLT----------LGR 570

  Fly   258 SDAVSILNTHLKITEPFDCQTAPVYAKDIPKKGNLDSVVNLLINN--NTKDLRFAFLTTSRLFSP 320
            :...|||.....:|...      |.:.:..|.|.|.::|:.|:.|  ..||.|.:||.|.:.|:.
pombe   571 NSLQSILMLDNLLTNKV------VQSDNNVKGGTLPALVHYLVQNVHLNKDFRHSFLLTYKTFTT 629

  Fly   321 PHQLLSKII-------------------AKIDN--EEENVLRLLNEWLDTCPGDFSHELLLQELE 364
            |.:|.:.::                   .|.||  .::||..::|.|:        .:...::|:
pombe   630 PQELFTLLVILFHELPPPGLDATAYSSWEKGDNFVTKKNVCTVMNLWV--------QKYFFEDLK 686

  Fly   365 NKRNVKGLAAFLDGIPQALAQKDENGR---SQLNNLLTKQSSASSLGRQSSIKSLKRFAANVYKT 426
            .:..:..::.....:...:......|.   |:::||.|::...|...|..|.......:.|||  
pombe   687 ARNTLYLISEMRTFLRDHVVPSFHIGSVILSEIDNLWTEEPPDSLTQRLLSSPMATFISLNVY-- 749

  Fly   427 DNVLNNCSSAFELAHQLYAIEYAYLSQIRLEEFVEILEKDELKTCISQTKAGTLGSNCISQVTID 491
                  ..:..|.|.|:..:|:.||.||...|::       .::.:|:.          |:..:.
pombe   750 ------AYTPEEFASQMTLLEFDYLKQIPSREWI-------FRSWVSRD----------SRSAVR 791

  Fly   492 SYVQWFNQLSYLTATEILKLGKKSQRAQMIDFWVETALECFNTGNFNSLMAILTALNLTAIARLK 556
            :|:.:.|..:|.....||:......|..:|.|:::||.:|.:..||::||:|::|||...|.||.
pombe   792 NYINFSNCFTYWIINCILEKKNTKARTAVISFFIQTAYKCLSLQNFSTLMSIVSALNSAPIYRLH 856

  Fly   557 KTWAKVQTTK---FEGLEHQMDPSSNFLNYRSTMKAAVWRSEREMANEIERAIIPFFSLFLKDLH 618
            ..:..|:...   ..||...::...||..||:.::.|            |...:||..:.|.||.
pombe   857 AAYKLVKAEDIICLSGLREIVETKKNFSTYRALLRKA------------ELPCVPFLGVILSDLT 909

  Fly   619 AINESHETKLANG--YINFEKCLHLGTQLRNFGKWQRLDCPYEQLPSVVSYLL-KAEVLSEDL-- 678
            .|:|.:...|.:.  .::|.|...|...:.:..::|......:....:.||:| :...:::||  
pombe   910 FIDEGNPDVLDSSPHLLSFNKRHRLADVVADVCRFQSSSYEMQSNTDLQSYILHRCRFVNQDLSY 974

  Fly   679 LMKASYESEP 688
            |...|...||
pombe   975 LFDKSLSLEP 984

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4853NP_611222.2 RasGEF_N 288..365 CDD:279012 23/99 (23%)
RasGEF 438..638 CDD:279011 51/204 (25%)
efc25NP_596123.1 RasGEF_N 593..700 CDD:279012 23/114 (20%)
RasGEF 755..932 CDD:279011 52/205 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

Return to query results.
Submit another query.