DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tes and lmcd1

DIOPT Version :10

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:XP_012815919.1 Gene:lmcd1 / 100124907 XenbaseID:XB-GENE-966902 Length:352 Species:Xenopus tropicalis


Alignment Length:748 Identity:124/748 - (16%)
Similarity:185/748 - (24%) Gaps:439/748 - (58%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LKRSKLG-HEAGAGAPCAECKDKCPGLDLHFWRKVCRNCKCPKIQHVCPDD--DDATGWAQFEIL 90
            :::..:| |.||.||||.:||..|.|...|.|||.|.:|:||:.:|..|.|  :|..       :
 Frog     7 IQKMSVGQHPAGKGAPCKKCKGSCSGFQPHSWRKQCGSCQCPREEHSLPSDLEEDCR-------I 64

  Fly    91 GQ----------------IRAKPAYIKIKALASQP-----------VQLEWVPPNAAPDVVTDYM 128
            ||                :.....|.:.:.:.:.|           |..||.||.....:...||
 Frog    65 GQLLSDSHYSGLTARMKGVEGSRVYKRNRMIITNPITSGKDPTFLTVTYEWAPPGLNQKLAMQYM 129

  Fly   129 EKLGTAQIPVAGSDAALKRKMQLELQVPPHDLDAALCDGLTETEAIQLQQYVQKLREQCVGQGVV 193
            |.:.....||||::.|..|::||..|:||:|.:..||.||:|.|...::.:|::.:||.:|    
 Frog   130 ELIPKNMQPVAGTEGAHYRRVQLLRQLPPYDHNPDLCQGLSERERTAMEDFVKRYKEQALG---- 190

  Fly   194 VRLGDRLNHAQVEHVAPALMPTQEAQQTWQSLGLMPVADDTLNELLANPKVAQALASPASAHPKL 258
                          ||...:|....|||                                     
 Frog   191 --------------VAEVALPCSAKQQT------------------------------------- 204

  Fly   259 LVAFSEPLCESTAQFEENGALRAQTREKLLGISKPALLSLVTHGIVYDKVLGILQEKKLNISRDP 323
                           |:||:...:|.    |.:|.|                             
 Frog   205 ---------------EKNGSKSKETN----GTAKEA----------------------------- 221

  Fly   324 KLGPIAEFRKEYVNNPQFRAEINTICPQPPMTPIKSPPGTPFNSPLPLKNPVQIRMGAQMRQDTP 388
                   |.|                                                       
 Frog   222 -------FEK------------------------------------------------------- 224

  Fly   389 MRRVKFGGVSTIVYDCGLPANTDYDRDPVFAQILQAEPLKHAFQEARAGRAPSSVVISNIPAPVA 453
                                 |:|                                         
 Frog   225 ---------------------TEY----------------------------------------- 227

  Fly   454 SLAELRGLNPATRAQLQSVGLDKNMLQSAVSNAPYYDRLFRSLHDKGISHDQCHLLQPMKQVHDW 518
                                                                             
 Frog   228 ----------------------------------------------------------------- 227

  Fly   519 LLDDDQLLDEIDKVFADMANGCKDISYPKPSLGELPTSQSSDSGFHSKPPTPGYGSEDLTAGQGR 583
                                                                             
 Frog   228 ----------------------------------------------------------------- 227

  Fly   584 FASIPGIEDMNMYPSCAGMPEQFQQLRLHGDEASGKNSTRTILCADCNQPIAMGEVAVKADRAGK 648
                                                      .|..|.||::....||.|:|||.
 Frog   228 ------------------------------------------FCEMCQQPLSRDAPAVYAERAGF 250

  Fly   649 EIAWHPGCFKCITCRELLADLVYFFHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATF 713
            :..|||.||.|..|||.|.:|:||:....::|||... ..:.|||..||::||:::|...:...:
 Frog   251 DKQWHPACFMCCQCREPLVNLIYFWRNNSLWCGRHYC-ESERPRCAGCDQMIFSEDYEQVDSGFW 314

  Fly   714 HIKHFCCYQCDEPLAGQQYIADEKSNMPLCLLC 746
            |..||.|..||:.|:|:.|:.|:.  .|||.||
 Frog   315 HRHHFSCTDCDQTLSGKPYVLDKA--QPLCDLC 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604 30/86 (35%)
LIM1_Testin_like 627..684 CDD:188726 26/56 (46%)
LIM2_Testin_like 691..748 CDD:188727 23/56 (41%)
LIM 755..810 CDD:413332
lmcd1XP_012815919.1 PET_testin 111..198 CDD:193604 32/104 (31%)
LIM1_Testin_like 229..286 CDD:188726 26/56 (46%)
LIM 292..345 CDD:413332 21/54 (39%)
Blue background indicates that the domain is not in the aligned region.

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