DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-6 and Smyd4

DIOPT Version :10

Sequence 1:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster
Sequence 2:NP_001096081.1 Gene:Smyd4 / 319822 MGIID:2442796 Length:799 Species:Mus musculus


Alignment Length:613 Identity:117/613 - (19%)
Similarity:204/613 - (33%) Gaps:217/613 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GRFAVALCNVRAGETLLLENPIVVLPLMGER-RCSKCF------NLT--ESFCRKCRLLAL---- 72
            ||..||..::..||.|:.|:..|.:.:.||. |...|.      .:|  :.:|.:|....|    
Mouse   244 GRHLVATKDILPGELLVKEDAFVSVLIPGEMPRPHHCLENKWDTRVTSGDLYCHRCLKHTLATVP 308

  Fly    73 CEDCS--DHDERDCKRLA-EMNFSDD------------------QVELLQKKEHTEIQPVLKCL- 115
            |..||  .:..::|.:.| ::..|.:                  ::.||.:.|  ::..|::.| 
Mouse   309 CGSCSYAKYCSQECMQQAWDLYHSTECSLGGLLLTLGVFCHVALRMTLLARFE--DVDRVVRMLC 371

  Fly   116 --------LLREHEETLPLYEEMSQMDSQLMTRRG--------------------------TEVW 146
                    .|.|.:..:..::..||.:|:..::.|                          ||  
Mouse   372 DEVGSTDTCLPESKNLVKAFDYTSQGESEEKSKIGEPPIPGCNVNGKYGSNYNAIFSLLPHTE-- 434

  Fly   147 KNYQEHAF-TPLDYGGVLAQLRGAADEDLVQGLLGILDINAYEIRAPEV--------------GG 196
            |:..||.| ..:....:..||:  ||           .:.|..:::|::              |.
Mouse   435 KHSPEHRFICAISVSALCRQLK--AD-----------SVQAQTLKSPKLKAVTPGLCADLTVWGA 486

  Fly   197 AM------------------------------------RGLYRRAGLFAHSCTPNLVISIDDEQR 225
            ||                                    .|::....|..|||.||..:|..... 
Mouse   487 AMLRHMLQLQCNAQAITSICHTGSNESIITNSRQIRLATGIFPVVSLLNHSCRPNTSVSFTGTV- 550

  Fly   226 IKVYANRFIAAGEILYNCY--TNVLLGTEERRKILKVGKCFDCSCPRCQDPT---ELGTHMSSFI 285
            ..|.|.:.||.|:.:.:||  ....:|..||::.|.....|||.|..|...|   .......:|.
Mouse   551 ATVRAAQRIAKGQEILHCYGPHESRMGVAERQQRLSSQYFFDCRCGACHAETLRAAAAPRWEAFC 615

  Fly   286 CSQCSCVDGYIVRQPDTGIWQCLLNPEHTLKQEFVSNMLERAKEEIFHARDDIYRQELLLAKLSR 350
            |..|..:      .....:..|        ..|..:|.:.|               :.|:::|. 
Mouse   616 CKTCRAL------MQGNDVLSC--------SNESCTNSVSR---------------DQLVSRLQ- 650

  Fly   351 LLHRNHFLMLDLKQNIASILRQILQNMGTRPNKKVYERKIRLCQEIL--------LVLKVVTPGI 407
                      ||:|.:.  :.|.|...| :|.:.:  :::..|:|..        .||..:..|:
Mouse   651 ----------DLQQQVC--MAQKLLRTG-KPEQAI--QQLLRCREAAESFLSAEHTVLGEIEDGL 700

  Fly   408 SRLKAIA---LYELANTQAELARKMYTEMEH--SANDLLAELERVEVMLRESLRMLLFEPLATPE 467
            ::..|..   |...|:.|..|   ...|..|  |:.::..||.:        |..:||..||.||
Mouse   701 AQAHATLGNWLKSAAHVQKSL---QVVETRHGPSSVEIGHELFK--------LAQVLFNGLAVPE 754

  Fly   468 G-----QLTRSMLRELKELQDDIKNLRE 490
            .     :..|.:|.......::::.|||
Mouse   755 ALSAIWKAERILLVHCGPESEEVRELRE 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-6NP_611182.1 SET_SMYD <185..271 CDD:380997 28/137 (20%)
Smyd4NP_001096081.1 3a0801s09 39..>211 CDD:273380
TPR repeat 68..96 CDD:276809
TPR repeat 101..136 CDD:276809
SET 243..>299 CDD:394802 15/54 (28%)
zf-MYND 296..335 CDD:460312 9/38 (24%)
SET_SMYD4 418..598 CDD:380934 38/195 (19%)
TPR_12 655..725 CDD:315987 14/77 (18%)
Blue background indicates that the domain is not in the aligned region.

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