DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-6 and Smyd2

DIOPT Version :9

Sequence 1:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster
Sequence 2:NP_081072.1 Gene:Smyd2 / 226830 MGIID:1915889 Length:433 Species:Mus musculus


Alignment Length:463 Identity:97/463 - (20%)
Similarity:178/463 - (38%) Gaps:101/463 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GRFAVALCNVRAGETLLLENPIVVLPL-MGER--RCSKCFNLTE--SFCRKCRLLALCE-DCSDH 79
            ||...||.....|: ||...|.....| :|||  .|..||...|  |.|.:|:....|: :|...
Mouse    18 GRGLRALRPFHVGD-LLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKE 81

  Fly    80 D----ERDCKRLAEM--NFSDDQVE------LLQKKEHTEIQPVLKCLLLREHEETLPLYEEMSQ 132
            |    :.:|..:..:  |::..:..      |.::|.|.|..|..|.|.:||.|..|   :::..
Mouse    82 DWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHL---DKLDN 143

  Fly   133 MDSQLMTRRGTEVWKNYQEHAFTPLDYGGVLAQLRGAADEDLVQGLLGILDINAYEIRAPEVGGA 197
            ....|:......:.:.|.::...| |:..::.             |...::.|.:.|...|:...
Mouse   144 EKKDLIQSDIAALHQFYSKYLEFP-DHSSLVV-------------LFAQVNCNGFTIEDEELSHL 194

  Fly   198 MRGLYRRAGLFAHSCTPNLVISIDDEQRIKVYANRFIAAGEILYNCYTNVLLGTEERRKILKVGK 262
            ...::....|..|||.||::::... ...:|.|.:.|..|:.::..|.::|..||:|...|:...
Mouse   195 GSAIFPDVALMNHSCCPNVIVTYKG-TLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSY 258

  Fly   263 CFDCSCPRC----QDPTELGTHMSSFICSQCSCVDGYIVRQPDTGIWQCLLNPEHTLKQEFVSNM 323
            .|.|.|..|    :|..::.                  ||:        |.:|.   :.|.:.:|
Mouse   259 FFTCECRECTTKDKDKAKVE------------------VRK--------LSSPP---QAEAIRDM 294

  Fly   324 LERAK---EEIFHARDDIYRQ--------ELLLAKLSRLLHRNHFLMLDLKQNIASILRQILQNM 377
            :..|:   ||...|:.  |:.        ||...|:|.:...::..||.:          :.|.|
Mouse   295 VRYARNVIEEFRRAKH--YKSPSELLEICELSQEKMSSVFEDSNVYMLHM----------MYQAM 347

  Fly   378 GTRPNKKVYERKIRLCQEILLVLKVVTPGISRLKAIALYELANTQAELARKMYTEMEHSANDLLA 442
            |.....:.:|..::..|      |::.| .|:...:....:|:...:|.| :|..:|:.|....|
Mouse   348 GVCLYMQDWEGALKYGQ------KIIKP-YSKHYPVYSLNVASMWLKLGR-LYMGLENKAAGEKA 404

  Fly   443 ELERVEVM 450
            ..:.:.:|
Mouse   405 LKKAIAIM 412

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SmydA-6NP_611182.1 SET <179..244 CDD:279228 13/64 (20%)
Smyd2NP_081072.1 SET_SMYD2 7..269 CDD:380979 63/269 (23%)