DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGEF2 and Arhgef1

DIOPT Version :10

Sequence 1:NP_477317.1 Gene:RhoGEF2 / 36915 FlyBaseID:FBgn0023172 Length:2559 Species:Drosophila melanogaster
Sequence 2:XP_006539628.1 Gene:Arhgef1 / 16801 MGIID:1353510 Length:980 Species:Mus musculus


Alignment Length:1276 Identity:305/1276 - (23%)
Similarity:490/1276 - (38%) Gaps:393/1276 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   858 GAAAAGPGVFIESHQFTPMAGASSPIPISLHSSHMHAAQSNDTQKEIISMEDEN--SDLDEPFID 920
            |.||.||          |.:|.     :|:                ||..|||:  ::|:....|
Mouse     6 GGAAPGP----------PRSGL-----VSI----------------IIGAEDEDFENELEANSED 39

  Fly   921 ENGPFNNLTRLLEAENVTFLAIFLNYVISNSDPAPLLFYLITELYKEGTSKDMRKWAYEIHSTFL 985
            :|..|.:|.::  ......|...|.:|....:|.|||..|..::......|:.:|...:.:.:||
Mouse    40 QNSQFQSLEQV--KRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFL 102

  Fly   986 ----VPRAPLSWYRQDESLAREVDNV---LQLEYDKVEILRTVFLRSRKRAKDLISEQLREFQQK 1043
                |.|.|:     ..|:|.|:|..   |..|..:...::.| ::|::.|   :|.||.:|:.|
Mouse   103 EKTAVLRVPV-----PPSVAFELDRTRPDLISEDVQRRFIQEV-VQSQQAA---VSRQLEDFRSK 158

  Fly  1044 RTAGLGTIYGPTDDKLA-------------EAKTDKLREQIIDKYLMPNLHALIEDENGSPPEDV 1095
            |..|:    .|.:.:|:             ||:...:.|::: .:|....|.:..||.       
Mouse   159 RLMGM----TPWEQELSLLEPWIGKDRGNYEARERHVAERLL-SHLEETQHTISTDEE------- 211

  Fly  1096 RKVALCSALSTVIYRIFNTRPPPSSIVERVHHFVSRDKS---------FKSRIMGKNR------- 1144
            :..|:.:|:|  :|               :.|...|.||         |:.::||..|       
Mouse   212 KSAAVVTAIS--LY---------------MRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPPKT 259

  Fly  1145 -----------KMNVRGHPLVLRQYYEVTHCNHCQTIIWGVSPQGYHCTDCKLNIHRQCSKVVDE 1198
                       :.| ||.|       ....|.|                   |.:.....|    
Mouse   260 KKGLSSILDPARWN-RGEP-------SAPDCRH-------------------LKVEADAEK---- 293

  Fly  1199 SCPGPLPQAKRLAHNDKISKFMGKIRPRTSDVIGNEKRSRQDEELDVELTPDRGQASIVRQPSDR 1263
              |||..:...|..:.         |.||   :|               ||.:....:...|   
Mouse   294 --PGPADRKGGLGMSS---------RDRT---VG---------------TPGQDNPGVSLHP--- 326

  Fly  1264 RPDANISIRSNGNTSCNTSGLNTTDLQSSFHGSCANDSINPGGGAGCNMDLSTSVASTTPSTSGS 1328
                                |:|..:          ||..||      :|.......|.|.    
Mouse   327 --------------------LSTDSV----------DSREPG------VDTPQEPGDTPPQ---- 351

  Fly  1329 VAAGLSAFAELNALDTVDKEARRERYSQHPKHKSAPVSVNRSESYKERLSNKRNRNSRRKTSDPS 1393
               |.::...|...::.:.....||     :.|.....:.||||.  |:|:      ||:.|..|
Mouse   352 ---GPTSLEPLAPPESTEDNGETER-----RWKRLSGRLGRSESL--RVSD------RRRPSRGS 400

  Fly  1394 LSSRPNDEQLDLGLSNATYVGSSNSSLSSAGGSESPSTSMEHFAAPGAAGGVQVPPMGLNQNQHP 1458
            |.::                       ...||.......|:    ||:|..|    :|..:...|
Mouse   401 LGAK-----------------------GRGGGRSRSDVDMD----PGSATAV----LGPTRRATP 434

  Fly  1459 HLLIQQHAQQYCQQDSFQAGLAGAAGSSAASNSSFWNAGHPLPVARWTLESEDEDDVNEADWSSM 1523
                             :.|..|..|.|.                   ||.|.|:   ...|..:
Mouse   435 -----------------EPGDDGEPGRSG-------------------LELEPEE---PPGWREL 460

  Fly  1524 VAAEVLAALTDAEKKRQEIINEIYQTERNHVRTLKLLDRLFFLPLYESGLLSQDHLLLLFPPALL 1588
            |..:.|.:|..::.||||:|:|:..||..|||.|::|..||:.|:.:.|....|.|..:| |:|.
Mouse   461 VPPDTLLSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMADGGFFPLDELQNIF-PSLD 524

  Fly  1589 SLREIHGAFEQSLKQRRIEHNHVVNTIGDLLADMFDGQSGVVLCEFAAQFCARQQIALEALKEKR 1653
            .|.|:|..|...|.:||.|..:::..|||:|...|||..|....:.:::||:||..|||.||.|:
Mouse   525 ELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQ 589

  Fly  1654 NKDEMLQKLLKKSESHKACRRLELKDLLPTVLQRLTKYPLLFENLYKVTVRLLPENTTEAEAIQR 1718
            .|:......::::||...||||:|||::||.:|||||||||.:::.:.|     |.:||...::.
Mouse   590 RKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT-----EESTERGKVEL 649

  Fly  1719 AVESSKRILVEVNQAVKTAEDAHKLQNIQRKLD----RSSYDK--EEFKKLDLTQHHLIHDGNLT 1777
            |.|..:.||..|||||:..||..:|::.||:||    |.|.|.  .|||.||:|:..|:|:|.||
Mouse   650 AAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLTHLRQSSDPMLSEFKNLDITKKKLVHEGPLT 714

  Fly  1778 --IKKNPSVQLHGLLFENMIVLLTKQDDKYYLKNLH----TPLSITNKPVSPIMSIDADTLIRQE 1836
              :.|:.::::|.||.:::::||.:||::..||: |    ||.......:.|::.: ...:.|:.
Mouse   715 WRVTKDKAIEVHVLLLDDLLLLLQRQDERLLLKS-HSRTLTPTPDGKTMLRPVLRL-TSAMTREV 777

  Fly  1837 AADKNSFFLIKM--KTSQMLELRAPSSSECKTWFKHFSDVA------ARQSKNRSKNASSNHDTS 1893
            |.|..:|::|..  :.:|:.||.|.:|||.|.|....::.|      |..|:.:.:.:.|    |
Mouse   778 ATDHKAFYVIFTWDQEAQIYELVAQTSSERKNWCNLITETAGSLKVPAPASRLKPRPSPS----S 838

  Fly  1894 ISDPALAAIPHSNTKESLELSTDTVQPLAATATLTTTPLAPMLPIATVTPAP-----ATNNSNVS 1953
            |.:|.|:         |.|..|...:...|.|. |...|..:||..  .|.|     ||....|.
Mouse   839 IREPLLS---------SSENGTGGAEMAPADAR-TERLLNDLLPFC--RPGPEGQLAATALQKVL 891

  Fly  1954 SLTGVQLRNPQRDATASESDADYV---NTPKPRSSQNEVNRTMSIRSTGEPIQKYSANGTEANDV 2015
            ||..:.|...:........|.|.|   ..|.|..:|......:|:                  :|
Mouse   892 SLKQILLSTEEDSGAGPPRDGDGVPGGRAPGPVHTQEIEENLLSL------------------EV 938

  Fly  2016 TLRHSQSTRE--------------SVRPGSTGEERNSTYGM 2042
            .:|..:...|              ::.|.....||::..|:
Mouse   939 AIRQLEELEEEFCRLRPLLSQLGGTLSPNLAAPERSAQTGL 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF2NP_477317.1 PDZ_ARHGEF11-12-like 258..333 CDD:467282
RGS_GEF_like 934..1055 CDD:188710 31/127 (24%)
C1_ARHGEF-like 1150..1202 CDD:410382 6/51 (12%)
RhoGEF 1539..1731 CDD:238091 76/191 (40%)
PH_16 1756..1876 CDD:436083 41/135 (30%)
Arhgef1XP_006539628.1 RGS_p115RhoGEF 50..242 CDD:188709 48/231 (21%)
PHA03247 <277..462 CDD:223021 59/372 (16%)
RhoGEF 479..663 CDD:214619 74/189 (39%)
PH_p115RhoGEF 697..821 CDD:275429 39/125 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.