DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha16-4 and Atp5mc1

DIOPT Version :8

Sequence 1:NP_611169.1 Gene:Vha16-4 / 36900 FlyBaseID:FBgn0262513 Length:155 Species:Drosophila melanogaster
Sequence 2:NP_059007.1 Gene:Atp5mc1 / 29754 RGDID:61933 Length:136 Species:Rattus norvegicus

Alignment Length:68 Identity:27/69 (39%)
Similarity:39/69 (57%) Gaps:8/69 (12%)


  Fly    93 LSAGLA-VGVSGMGAGIAIGVVGEAGVRASAQQP----KLFVAIILILIFAEVLGLYGLIVA-IY 151
            :.||.| |||:|.|||  ||.|..:.:...|:.|    :||...||....:|.:||:.|:|| :.
  Rat    70 IGAGAATVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 132

  Fly   152 LFS 154
            ||:
  Rat   133 LFA 135

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Vha16-4NP_611169.1 ATP-synt_C 13..118 CDD:294318 13/26 (50%)
ATP-synt_C 93..152 CDD:278563 25/65 (38%)
Atp5mc1NP_059007.1 ATP9 62..136 CDD:164765 27/69 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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