DRSC/TRiP Functional Genomics Resources

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Protein Alignment Idgf6 and lmd-4

DIOPT Version :10

Sequence 1:NP_477081.1 Gene:Idgf6 / 36868 FlyBaseID:FBgn0013763 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_504862.2 Gene:lmd-4 / 179121 WormBaseID:WBGene00017233 Length:2011 Species:Caenorhabditis elegans


Alignment Length:467 Identity:104/467 - (22%)
Similarity:180/467 - (38%) Gaps:124/467 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 SKV----GAPQLPK----KHLVCYYDSASFVKEGLGKLVIDELEPALQFCDYLVYGYAGIERDSH 75
            |||    |...||.    |.:|.||       .|.|...|.|.:  |:...::::.:..:..|. 
 Worm  1461 SKVEEPTGKSSLPAASCGKRIVGYY-------TGWGDREITENQ--LKKLTHVIFAFVAMYEDG- 1515

  Fly    76 KAVSLNQQLDLDLG----KGLYRTVTRLKRK----YPNVKILLSVGGDKDIELDKDAKELPNKYL 132
             :|......:.|.|    |...|....:|:|    ...|::|.:|||..:           ::|.
 Worm  1516 -SVKFGAVSEDDSGPQAAKKAERRFLNMKKKARAANSGVRVLFAVGGWDN-----------SQYF 1568

  Fly   133 ELLESPTG-RTRFVNTVYSLVKTYGFDGLDVAWQFPKNKPKKVHSGIGSLWKGFKKVFSGDSIVD 196
            ..:.:.:| |.:||:::.|.|:....||:|:.|::|.:..|...:.: .|.|..::.||..:   
 Worm  1569 SSVAADSGKRKKFVDSIASFVEDQKIDGVDLDWEYPDSNGKDAKNHV-QLIKEIREKFSEMA--- 1629

  Fly   197 EKSEEHKEQFTALLRDVKNAFRPDNLLLSTTVLPNVNSSLFYDIPAVVNYLDFVNLGTFDFF--- 258
             |.::.|:.:...|......:               |....||:..::.|.||:|:.|:|::   
 Worm  1630 -KKKKRKDPYVITLASAAGEW---------------NLRKGYDLKGILKYADFINVMTYDYYGAW 1678

  Fly   259 ---------TPQRNPEVADYAAPIY--ELSERNPEFNVAAQVKYWLRNNCPASKINVGVATYGRP 312
                     ||          ||:|  .|...:.:.|....:|::.......|::|:||..|||.
 Worm  1679 ESKWGAYTGTP----------APLYFGSLKGFSGKLNADFSMKFYACKTEKPSQLNMGVPFYGRY 1733

  Fly   313 WKLTDDSGDTGVPPVKDVKDE-----APVGGNTQVPGIYSWPEVCALLPNQNNAYLKGANAPLIK 372
            ||       ..:.|: |..|.     ||..|..: .|...|..:.      ...:.||:.:...|
 Worm  1734 WK-------NVLGPI-DKSDNMWRTAAPQNGKYE-GGYVGWRNLA------KEGWNKGSASWHEK 1783

  Fly   373 VQDPAKRFGSYAYRAADKKGDNGIWVSFEDPDTAADKAGYVRTENLGGVALFDLSYDD------- 430
            .:.|      |......||     ::.||:..:..:|..|....||||:.::.|..||       
 Worm  1784 TKTP------YIMNNGAKK-----FLGFENERSLKEKMKYATDRNLGGLMIWALDLDDDADTLLN 1837

  Fly   431 ---FRGLCTNEK 439
               ..|||:..|
 Worm  1838 LVSSAGLCSGGK 1849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Idgf6NP_477081.1 GH18_IDGF 30..450 CDD:119352 97/448 (22%)
lmd-4NP_504862.2 PRK06347 <22..351 CDD:180536
LysM 142..185 CDD:197609
LysM 209..250 CDD:197609
LysM 270..313 CDD:197609
LysM 334..377 CDD:197609
LysM 401..444 CDD:197609
PRK06347 <445..726 CDD:180536
LysM 550..590 CDD:197609
LysM 635..678 CDD:197609
LysM 710..750 CDD:197609
LysM 760..802 CDD:197609
Self-incomp_S1 1359..1429 CDD:461784
Glyco_18 1480..1825 CDD:214753 90/422 (21%)
ChtBD1_GH18_2 1873..1924 CDD:211315
ChtBD1_GH18_2 1951..2002 CDD:211315
Blue background indicates that the domain is not in the aligned region.

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