DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn2 and Syn1

DIOPT Version :10

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_524205.2 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster


Alignment Length:497 Identity:122/497 - (24%)
Similarity:217/497 - (43%) Gaps:92/497 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 SKERMVQITRQKQGGLGLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACP 138
            :::|.|:|.:....|||:|||||.|:::|||||:|::..|||....|:|||||:.||||.:....
  Fly   160 NQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGDAILTVNGEELRDAT 224

  Fly   139 HDDAVNILRNAGDIVVLTVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSGTIS 203
            ||:||..|:.:|.:|.|.||..|..||:.:|               |.:.::.|::       :.
  Fly   225 HDEAVRALKRSGRVVDLEVKFLREVTPYFRK---------------ASIISEVGWE-------LQ 267

  Fly   204 RSCSRPMS---ICSEPEKRWT---DVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIH 262
            |:...|:.   ..|.|..:.|   |...:||.:.::.|.:...|. ....||:...:|:.:.::.
  Fly   268 RAFLCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDP-ENRCFELHSPDGVHSCILR 331

  Fly   263 CDELAILSQWLKLITDNVVGLTHLQMKLYNRNFA----VGERIEYMGWVNE-------------- 309
            ..:.|....|...: .:.:| |..|..|...|.|    :|| ::::||:::              
  Fly   332 AADSAEALVWFNAL-HSAMG-TSTQRALAEANRALTNLIGE-LKHIGWLSKRMSGGGSSGSAGGG 393

  Fly   310 ------GVINNNISWQ-----------------SYKPRFLLLKGTEVMLFETPPLNVAGISKALV 351
                  |..|:.::.:                 .:.|.|:.:...|..::|:.|.:|...|:.|.
  Fly   394 AASGGSGTSNSVVAGELVSPSGRSSSESSDESDKWLPIFVAVTEREFRIYESAPWSVEAWSRPLE 458

  Fly   352 VYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNAAIVT---SVIK 413
            :|.:..|.......:.:::.:|........|.....|....|.|..|...:|..::|.   ..:.
  Fly   459 IYALATTRLAGAGNNSSLNGQQTTVFCVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVN 523

  Fly   414 LGRK-TFAVSHHGKSGGLTLDWQAGFSL-----------TEGAESATVWQYKFSQLRGSSDDGKS 466
            ..|: :|.....|:...|.:....||.|           |.......:||:.|.:|:||:|||..
  Fly   524 YQREFSFRCLFQGRQCQLVVHINRGFFLYDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGAR 588

  Fly   467 KLKLHFQDHDSRAIETKELECQVLQSLLFCMHAFLTAKVASV 508
            .|.|.|.:...  ||. ::|| ..:.::|.:|..|:|||.::
  Fly   589 MLYLDFGEDGE--IEL-DMEC-CPKPVVFVVHNCLSAKVHNI 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_syntrophin-like 77..159 CDD:467262 40/81 (49%)
PH 301..407 CDD:214574 21/142 (15%)
Syn1NP_524205.2 PH-like 30..>61 CDD:473070
PDZ_syntrophin-like 163..245 CDD:467262 40/81 (49%)
PHsplit_syntrophin <293..351 CDD:269960 10/60 (17%)
Blue background indicates that the domain is not in the aligned region.

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