DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn2 and sntg1

DIOPT Version :10

Sequence 1:NP_788381.1 Gene:Syn2 / 36848 FlyBaseID:FBgn0034135 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_004915254.1 Gene:sntg1 / 100489155 XenbaseID:XB-GENE-1011498 Length:522 Species:Xenopus tropicalis


Alignment Length:500 Identity:198/500 - (39%)
Similarity:302/500 - (60%) Gaps:20/500 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KVRTGMVHVSDGKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGGL 89
            :.:||:..:.||...|..:||:|..::|.:|:.:|:..|     |.|..|.||.|.|.||..||.
 Frog     9 EAKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVS-----GEPFYSGERTVAIRRQTVGGF 68

  Fly    90 GLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIVV 154
            |||||||:||.:|::||:|.|:|.|:::|.||:||||:::||..:..|.|::.|.:|||||:.|.
 Frog    69 GLSIKGGSEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCKHEEVVQVLRNAGEEVT 133

  Fly   155 LTVKHYRAATPFLQKQLTKD---TPDSDNDVTCAELKADEGYKSSVN-SGTISRSCSR-PMSICS 214
            |||...:.:..||:..|.:|   .|...:..|.:.| .|.|...:.: :.|.|.|||. |.|...
 Frog   134 LTVSFLKRSPAFLKLPLNEDCSCVPCDQSSGTSSPL-CDSGLHLNYHPNNTDSLSCSSWPTSPGL 197

  Fly   215 EPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAILSQ----WLKL 275
            ..||||.|:..:||:.:.::::|.|||..|||||:|..::|:.:|:|.|    :|::    ||:.
 Frog   198 RWEKRWCDLRLIPLLHSRLSQHITGTDLCRQNAFQVTAVDGVGSGIIQC----LLAEECIDWLQS 258

  Fly   276 ITDNVVGLTHLQMKLYNRNFAVGERIEYMGWVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPP 340
            |:.|:..||...:|..||||.|.::|.::|||.|.. .:.:....|.|:||.|:|:.:..|.:||
 Frog   259 ISANISNLTKHNIKKINRNFPVNQQIVFLGWVEERE-QDTLKDYVYSPKFLALRGSSLYKFNSPP 322

  Fly   341 LNVAGISKALVVYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNA 405
            :......:|...:.||:.|.:|.|:|:.:|.|:|||.:||...|..|.|||...:||:.|.::..
 Frog   323 VTTWDWMRAEKKFTVYEIMCKIFKDSDLLDRRKHCFGVQSETGEDLYFSVELECDLLQWEKAFQT 387

  Fly   406 AIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFSQLRGSSDDGKSKLKL 470
            |....|.::..||:|........|||:|:..||...:.|..|.:|:||||||:|||||||||:|.
 Frog   388 ATFLEVERIQCKTYACVIESHLMGLTIDFGMGFICFDAATKAILWKYKFSQLKGSSDDGKSKIKF 452

  Fly   471 HFQDHDSRAIETKELECQVLQSLLFCMHAFLTAKVASVDPAFLSS 515
            .||:.|::.||.||||...|.::|.|:|:|..||||.:||.|:.|
 Frog   453 LFQNQDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPRFVDS 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syn2NP_788381.1 PDZ_syntrophin-like 77..159 CDD:467262 44/81 (54%)
PH 301..407 CDD:214574 36/105 (34%)
sntg1XP_004915254.1 PDZ_syntrophin-like 56..138 CDD:467262 44/81 (54%)
PH-like 288..381 CDD:473070 34/93 (37%)

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