DRSC/TRiP Functional Genomics Resources

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Protein Alignment wcd and UTP18

DIOPT Version :10

Sequence 1:NP_611121.1 Gene:wcd / 36831 FlyBaseID:FBgn0262560 Length:506 Species:Drosophila melanogaster
Sequence 2:NP_012466.1 Gene:UTP18 / 853376 SGDID:S000003605 Length:594 Species:Saccharomyces cerevisiae


Alignment Length:617 Identity:143/617 - (23%)
Similarity:223/617 - (36%) Gaps:184/617 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 IPKASQAKELNYVEVPMEKVLFGDRQRLLTNLAK------------------SVGQKLPNDDEDE 83
            :|...:.::|      :.|.:|||...|..||||                  ..|.:..|.:|||
Yeast    12 VPPPDEEEQL------LAKFVFGDTTDLQENLAKFNADFIFNEQEMDVEDQEDEGSESDNSEEDE 70

  Fly    84 -------------------------------------QEENPGQAKPGDKRKAAWSDSDDEDLQV 111
                                                 ::::.......|..:|||.|||||.::|
Yeast    71 AQNGELDHVNNDQLFFVDDGGNEDSQDKNEDTMDVDDEDDSSSDDYSEDSEEAAWIDSDDEKIKV 135

  Fly   112 GDVKKATKHTGPLNHLRKDK----SYKE----------YLTARFQRTLNQPKWAEKKVKNEDDED 162
                       |:....|.|    ||.|          .|.::|::...:|||.:.:..:|.|::
Yeast   136 -----------PILVTNKTKKLRTSYNESKINGVHYINRLRSQFEKIYPRPKWVDDESDSELDDE 189

  Fly   163 VSSDEE----------------LLRTVGFIDRKARNSDLPQKTLNFKRVKDLNRATYAEGNATSI 211
            ...:||                |..|..:.|..:.:..||.|.|:..|:||.|.:..:.....|:
Yeast   190 EDDEEEGSNNVINGDINALTKILSTTYNYKDTLSNSKLLPPKKLDIVRLKDANASHPSHSAIQSL 254

  Fly   212 QFHPTSTAALVAGMNGLATIYAVDGQKNERLHNMRFKKFPLACSRIAPCGTRAFFGSVKPFYYSY 276
            .|||:....|..|.:....||.:||:.|..:.::.     |..|.|..|          .||.| 
Yeast   255 SFHPSKPLLLTGGYDKTLRIYHIDGKTNHLVTSLH-----LVGSPIQTC----------TFYTS- 303

  Fly   277 DLLEAKESKLKLPGAMEFMHRFEVS----------PCGKFIVTAG---------KFGAIHLLTAK 322
             |....:..:...|...:||.:::|          ...||....|         .|...||..::
Yeast   304 -LSNQNQQNIFTAGRRRYMHSWDLSLENLTHSQTAKIEKFSRLYGHESTQRSFENFKVAHLQNSQ 367

  Fly   323 TN---------------ELLHS--------FKQEGKVKGF-----TWSSDSKRILVCGSTSNVSV 359
            ||               .:|||        .|.||.:..|     ..|....|.::....:...|
Yeast   368 TNSVHGIVLLQGNNGWINILHSTSGLWLMGCKIEGVITDFCIDYQPISRGKFRTILIAVNAYGEV 432

  Fly   360 LNLRQNLIEHI---FMDDGCIHGESIQLS---------------PNQRLLATGSQEGVVNIYDYE 406
            .....|...|:   :.|.|.:....||:.               ...|.||.||:.|.||:||..
Yeast   433 WEFDLNKNGHVIRRWKDQGGVGITKIQVGGGTTTTCPALQISKIKQNRWLAVGSESGFVNLYDRN 497

  Fly   407 SIFASKAPQPEKRFMNLRTAITDLQFNHSSELLAMCSSEAPNAFKLAHFPSATVYSNFPAQNEKV 471
            :...|..|.|......|.|.|::|||:...::|.|.|....:|.:|.|.||.:|:||:|.....:
Yeast   498 NAMTSSTPTPVAALDQLTTTISNLQFSPDGQILCMASRAVKDALRLVHLPSCSVFSNWPTSGTPL 562

  Fly   472 GFVTSMAFSPHSSFLAFATKGKQVPLFRLKYF 503
            |.|||:||||....||...:..:|.|::|.::
Yeast   563 GKVTSVAFSPSGGLLAVGNEQGKVRLWKLNHY 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wcdNP_611121.1 WD40 180..501 CDD:441893 98/385 (25%)
WD40 repeat 209..247 CDD:293791 11/37 (30%)
WD40 repeat 298..332 CDD:293791 12/75 (16%)
WD40 repeat 337..371 CDD:293791 6/41 (15%)
WD40 repeat 376..415 CDD:293791 13/53 (25%)
WD40 repeat 428..465 CDD:293791 14/36 (39%)
UTP18NP_012466.1 WD40 <236..592 CDD:441893 94/372 (25%)
WD40 repeat 251..287 CDD:293791 11/35 (31%)
WD40 repeat 296..347 CDD:293791 11/62 (18%)
WD40 repeat 350..401 CDD:293791 9/50 (18%)
WD40 repeat 409..448 CDD:293791 5/38 (13%)
WD40 repeat 473..512 CDD:293791 13/38 (34%)
WD40 repeat 519..556 CDD:293791 14/36 (39%)

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