DRSC/TRiP Functional Genomics Resources

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Protein Alignment CngA and kcnh6a

DIOPT Version :10

Sequence 1:NP_001188960.1 Gene:CngA / 36806 FlyBaseID:FBgn0261612 Length:840 Species:Drosophila melanogaster
Sequence 2:NP_998002.1 Gene:kcnh6a / 405763 ZFINID:ZDB-GENE-040702-5 Length:1186 Species:Danio rerio


Alignment Length:663 Identity:157/663 - (23%)
Similarity:274/663 - (41%) Gaps:145/663 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 KQHY--------QPN-----------ASDSSYVENGRKLIQE-------------PSKRSKPSA- 210
            |.|:        ||:           :.||......:.|||:             ||.|.:||. 
Zfish   176 KDHFEGVVVDYLQPSHEEVALKDLQMSPDSCLKSETQALIQQTPSSCELSPPPSRPSDRLEPSGP 240

  Fly   211 ------LRRTLQALRQRLTKRNRPKPPD-WFLEKFSNTTNT-----------------------D 245
                  .|.::.:||:..:..:.....| |...|.||..:|                       |
Zfish   241 LLKHSHSRESMHSLRRASSLHDIDGMRDQWSDLKPSNLNSTSDSDLMRHRTIGRIPQVTISFGSD 305

  Fly   246 KIGKGCPAMEDAALSSEIR-------------------GSSVLCNRLSVDPTLQS----HYR--- 284
            ::....|...:....|:|:                   |:.||.......|.:..    ||.   
Zfish   306 RLRPPSPTEIEIIAPSKIKDRSQNVSEKVTQVTQVLSLGADVLPEYKLQAPRIHKWTILHYSPFK 370

  Fly   285 --WLAIVSLAVLYNIIFVVGRAVFWEINKSAPAFWYTLDYLC----------DFIYLLDTLVHMH 337
              |..|:.|.|||..:|....|.|. :|:.......|..|.|          |.::::|.|::..
Zfish   371 AVWDWIILLLVLYTAVFTPYSAAFL-LNEQEDERRRTCGYTCNPLNVVDLVVDVMFIIDILINFR 434

  Fly   338 EGFLDQG-LLVRDAFRLRRHYFHTKGWYL-DVLSMLPTDLAYIWW---PPETCSSLYLPCPVIVR 397
            ..:::.. .:|.:..|:.:|||  |||:| |:::.:|.||.....   .|:|.:.:.|     ::
Zfish   435 TTYVNHNDEVVSNPARIAQHYF--KGWFLIDIVAAIPFDLLIFRSGSDEPQTTTLIGL-----LK 492

  Fly   398 LNRLLRINRLWEWFDRTETATGYPNAFRICKVVLAILVLIHWNACMYFAI-------SYEIGFSS 455
            ..||||:.|:....||............:|...|    :.||.||:::||       |..||...
Zfish   493 TARLLRLVRVARKLDRYSEYGAAVLFLLMCTFAL----IAHWLACIWYAIGNMERTSSARIGGMK 553

  Fly   456 DSWVYNL-----------NGTRNNTLQRQYIYSFYWSTLTLTTIG-ETPTPENDVEYLFVVADFL 508
            ..|:.||           |.....:::.:|:.:.|::..:||::| ...:|..:.|.:|.:...|
Zfish   554 IGWLDNLADQIGKQYNDSNSFSGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNPEKIFSICVML 618

  Fly   509 AGVLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFRRVGHELEARVIRWFAYTWSQSGAL 573
            .|.|::|:|.||:.::|..:......:..:|..||:::.|.::...|..|:..:|.:.|..:..:
Zfish   619 IGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPGGLRQRLEEYFQHAWPYTNGI 683

  Fly   574 DEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKLKLQVFSPGDYICRKGDVG 638
            |...||...|:.|:|:|.:.::...|:..:.|.....|.|.||.::.:.....|||.:...|||.
Zfish   684 DMNAVLKGFPECLQADICLHLNRSLLQSCKAFRGASKGCLRALAMRFRTTHAPPGDTLVHSGDVL 748

  Fly   639 KEMYIVKRGKLSVVGDDGITVLATLGAGSVFGE-VSVLEIAGNRTGNRRTANVRSLGYSDLFCLA 702
            ..:|.:.||.:.::.||  .|:|.||...:||| :|:....|     :.:|:||:|.|.||..:.
Zfish   749 TALYFISRGSIEILRDD--VVVAILGKNDIFGEPISLYARPG-----KSSADVRALTYCDLHKIL 806

  Fly   703 KRDLWETLSDYPE 715
            :.||.|.|..||:
Zfish   807 RDDLLEVLDMYPD 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngANP_001188960.1 Ion_trans 282..529 CDD:459842 72/285 (25%)
CAP_ED 604..717 CDD:237999 38/113 (34%)
CLZ 720..790 CDD:465160
kcnh6aNP_998002.1 PAS_9 38..130 CDD:463873
Ion_trans 372..640 CDD:459842 70/279 (25%)
CAP_ED 714..821 CDD:237999 38/113 (34%)
Blue background indicates that the domain is not in the aligned region.

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