DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsf3 and tf

DIOPT Version :10

Sequence 1:NP_523759.1 Gene:Tsf3 / 36800 FlyBaseID:FBgn0034094 Length:714 Species:Drosophila melanogaster
Sequence 2:NP_001027487.1 Gene:tf / 613079 XenbaseID:XB-GENE-480506 Length:703 Species:Xenopus tropicalis


Alignment Length:768 Identity:177/768 - (23%)
Similarity:295/768 - (38%) Gaps:175/768 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ISMCVAVQPPDDGKLRVCVVESRGVYRKTPKF---C-------PLLEAKSNIECVIGV--DRLDC 70
            :::|:|: ||.:.::|.| .:|:..:.|....   |       ..:|..|..||:..:  ||.|.
 Frog    14 LALCLAM-PPKEKQVRWC-AKSKSEFSKCRDLVNTCKNKEITLSCVEKSSTDECLTAIQNDRADA 76

  Fly    71 VRRIHKGTAHFGVLTSEDLVAARWASVEILVASELRSH-ESHFEYEIVAVVDNHANIHTVHDLRG 134
            : .:..|..:.|.|...:|        :.::|....|| |....|..|||| ..::..|..:||.
 Frog    77 I-CVDGGDVYKGSLQPYNL--------KPIMAENYGSHTEPDTCYYAVAVV-KKSSTFTFDELRD 131

  Fly   135 ARLCHPGYGLGNHWTEVLANYFEAAMVSKTCDPEMTVTEDRIASTAKYFGPSCKAGPWVPDPKQD 199
            .|.||.|.|....|..::....|..:: |...|:   ||....:.:|:|..||     ||..|: 
 Frog   132 KRSCHTGIGKTAGWNVIIGLLLEKQLL-KWEGPD---TESLEKAVSKFFKASC-----VPGAKE- 186

  Fly   200 RILKNRYPSLCEMC--YEPDSC--DQTDKHWGRRGALYCLTSGGGNVAWARLDDVRSHFGFSGIP 260
                   |.||:.|  .:...|  ...:.::...||..||....|:||:.:         .|.:|
 Frog   187 -------PKLCQQCAGKKEHKCARSNNEPYYNYAGAFKCLQDDKGDVAFVK---------HSTVP 235

  Fly   261 AQSNPSDFSYLCPDGHLQPLNASQPCVWVAKPWPVVAARRSHAAQVQRLVTGLNHDEPD------ 319
            .:.: .|:..||||...:|::..:.|.....|...|.| |:...:.:.::..|...:..      
 Frog   236 EELH-KDYELLCPDNTRKPISDYKNCNLAKVPAHSVLA-RARDDKSKDIIAFLQEAQKTKECKLF 298

  Fly   320 SWQNALLSLLETYHVFTVPLDNVI-------AIDDYLDQATAFQSAYSFPECNPPRSIVFCTTSI 377
            |.|:....|.:...|..|||...|       |:  |..:..|.:......:...|..:.:||.|.
 Frog   299 SSQHGKDLLFKDTAVSLVPLPPTIDGFLFLGAV--YYQEIHALKEGVKEDDLAAPSKVRWCTQSK 361

  Fly   378 IQHIKC-SWLQEASQVYGVQPNIQCVRTMDEQQCLDNTKFKETDVVLVDQEMRVKAQRDYNLVPL 441
            .:..|| .|    :.:.|  .:|:|......:.|:......:.|.|.:|......|.: ..|||:
 Frog   362 AEKTKCDDW----TTISG--GSIECTEAATAEDCILQILKGDADAVTLDGGYMYTAGQ-CGLVPV 419

  Fly   442 LYEFAADMHDR-------------YVTIALVHKDAKFESFRDLKGARACLPSFEGAAHLSVQET- 492
            :.|: .|:.|.             |..:|:..|..|. |:::|:|.:.|        |.:|..| 
 Frog   420 MGEY-YDLDDLTPCQRRSSQAKGVYYAVAIAKKGTKV-SWKNLRGVKTC--------HTAVGRTA 474

  Fly   493 --------IVNATGKVQSLHSYFHRDS-------------CLWN----LQSGRKCPLH----YQG 528
                    |.|.|... ...||.....             |:.:    |.|.:||...    |.|
 Frog   475 GWNIPVGLITNETNNC-DFASYVGESCAPGSDVKSNLCKLCIGDPAKPLDSAKKCSPSASEAYHG 538

  Fly   529 DEGALRCLSEGADVAFLSSDVYKKYVVGNLTSNWLTPGNHKDFRVLCPYGGIEKRSNFEYCYLHW 593
            ..||.|||.|..||.|.......:...|...:.|.......|:.:|||.|.....::|:.|.|  
 Frog   539 YSGAFRCLVEKGDVCFAKHTTVFENTDGKNPAAWAKDLKSDDYELLCPDGSRAPINDFKRCNL-- 601

  Fly   594 TTRGHLMTHNSSLT---RRNEIYNSLRDMDQLFGRK-YKSETRPFTLYGIFDKRN--NVLFRDDT 652
               ..:..| |.:|   :|..:...|.:...|:||| ::.:     ::.:|..::  ::||:|.|
 Frog   602 ---AEVPAH-SVVTLPGKRKPVVEILVNQQSLYGRKGFQKD-----IFQMFQSKDGKDLLFKDST 657

  Fly   653 DGLLGLQELHRDNAKRVM-EHIYDRY----------ANTQYYRNFDESGAMKS 694
            ..||.:.|      |..| |.:.|:|          :||       :||.:.|
 Frog   658 QCLLEISE------KTTMQEFLGDKYYTAVTSLNKCSNT-------KSGLLSS 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsf3NP_523759.1 PBP2_transferrin 33..368 CDD:270247 83/364 (23%)
PBP2_transferrin 369..681 CDD:270247 85/372 (23%)
tfNP_001027487.1 PBP2_transferrin_N 26..340 CDD:270336 83/354 (23%)
Connecting region. /evidence=ECO:0000250 341..350 0/8 (0%)
PBP2_transferrin_C 353..685 CDD:270335 84/366 (23%)

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