DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsf3 and otomp

DIOPT Version :10

Sequence 1:NP_523759.1 Gene:Tsf3 / 36800 FlyBaseID:FBgn0034094 Length:714 Species:Drosophila melanogaster
Sequence 2:NP_001038552.1 Gene:otomp / 565818 ZFINID:ZDB-GENE-040709-1 Length:371 Species:Danio rerio


Alignment Length:314 Identity:70/314 - (22%)
Similarity:123/314 - (39%) Gaps:53/314 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 KSNIECVIGVDRLDCVRRIHKGTAHFGVLTSEDLVAARWA-SVEILVASELRSHESHFEYEIVAV 119
            :..:.||.|....||:::|..|||....:.::::..|.:. .:::.|.......:. ..|.:||:
Zfish    53 RGQLVCVRGQSPTDCMKQIKNGTADASTMYADEIYTAGFCYGLDVAVGESYNGVDG-INYYVVAL 116

  Fly   120 VDNHANIHTVHDLRGARLCHPGYGLGNHWTEVLANYFEAAMVSKTCDPEMTVTEDRIASTAKYFG 184
            ....::..::.::.....||||......||..:......:.:|  .|.:.....    :...:||
Zfish   117 ARTSSSDLSLLEMHERSSCHPGMRTTVGWTVPIGFLVNTSQIS--VDVQCNFPH----AVGDFFG 175

  Fly   185 PSCKAGPWVPDPKQDRILKNRYP-SLCEMCYEPDS----C--DQTDKHWGRRGALYCLTSGGGNV 242
            .||.  |.|.||:.|.  |...| :|||.|...::    |  :..::|:|..|||.|:....|:|
Zfish   176 YSCV--PGVKDPEHDP--KGNNPRNLCEACIGDENDRHICANNPRERHFGEAGALRCVAENLGDV 236

  Fly   243 AWARLDDVRSHFGFSGIPAQSNPS--------DFSYLCPDGHLQPLNASQPCVWVAKPWPVVAAR 299
            |:.:...|     |..:..::..|        |...|||||....|...:.|.....|...|..|
Zfish   237 AFVKHTTV-----FDNMQGKNQESWALDLELEDLKLLCPDGSEANLFQHESCHLAVVPTNAVVVR 296

  Fly   300 RSHAAQVQR-----------------LVTGLNHDEPD----SWQNALLSLLETY 332
            .....:|.:                 |.:.:|:.:||    .....||.::.||
Zfish   297 LEDKCRVYKFLERVQNAFGNTTEGFSLFSSVNYGQPDVLFSDSTKKLLRVMGTY 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsf3NP_523759.1 PBP2_transferrin 33..368 CDD:270247 70/314 (22%)
PBP2_transferrin 369..681 CDD:270247
otompNP_001038552.1 PBP2_transferrin 27..363 CDD:270247 70/314 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.