DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and Lrig3

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001419387.1 Gene:Lrig3 / 299830 RGDID:1561255 Length:1116 Species:Rattus norvegicus


Alignment Length:1027 Identity:325/1027 - (31%)
Similarity:528/1027 - (51%) Gaps:119/1027 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 GVQGSSSSSGISIQSGSLETNGFVADDGGQYEHAQKALEAAAAAAKASNKYNIDCPKDCKCLNVL 275
            |::.::::.|:.:.:| |...| .|..||.....|.:.||...          .||..|.||..|
  Rat     5 GLRAAAAALGLLLCAG-LGRAG-PAGSGGHGAPGQLSDEATRR----------PCPAACHCLGDL 57

  Fly   276 FDCDKLHLERVP-VLPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRNLLEVIPKFIGLS-G 338
            .||.:..|.|:| .||::|..|.|::|:|:......:.:|.:|.:|.|..|.||.||....:| .
  Rat    58 LDCSRRRLIRLPDPLPAWVTRLDLSHNRLSFIQASSLSHLQSLQEVKLNNNELETIPNLGPVSAN 122

  Fly   339 LKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKSNNLVHLILSFNEITNVNEH 403
            ::.|.||.|.|..|..|.|.|...|.|||||.|.:..:. .:||.. .|.:|.::.|.:|::...
  Rat   123 IRQLSLAGNAIDKILPEQLEAFQSLETLDLSNNNISELR-TAFPPL-QLKYLYINSNRVTSMEPG 185

  Fly   404 SFATL-NNLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQLE-INWSTFRGLESMKNLQLKSN 466
            .|..| :.|..|:|:.||:|.:|.::|| |.||:.|.||.|::: ::..||:||.::|:|:::.|
  Rat   186 YFDNLGSTLLVLKLNRNRISAIPPKMFK-LPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRN 249

  Fly   467 KIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTKLRHLNLSFNAISRIEVDTWEFTQSLE 531
            .:..|.||.|:.:..:|.:.|..|.::.:::..|:.|..||.|:||.|||:||..|.|||.|.|.
  Rat   250 GVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLMLRELHLSQNAINRISPDAWEFCQKLS 314

  Fly   532 VLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEELNLRRNRLSWIIEDQS 596
            .|||:.|.::.........|..|..|::.:|::.|:.:..|..:.:|:.|:||.|.:||.|||.:
  Rat   315 ELDLTFNHLSRLDDSSFLGLSLLNALHVGNNKVSYIADCAFRGLSSLKTLDLRNNEISWTIEDMN 379

  Fly   597 AAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASIQVNAFEHMLRLNKLVFK 661
            .|  |.||.|||:|.|.||.::.|:.||.:||:.||.|:|..||:.|:|.|||..|.:|.:|...
  Rat   380 GA--FSGLDKLRQLILQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQNNAFSQMKKLQQLHLN 442

  Fly   662 SLNFICDCDLVWFQQWL-KNRFPQQAEHAVCGYPEHLLDRHLKSLSSSELVCVDSPKPRVEQEPD 725
            :.:.:|||.|.|..||: :|.| |...:|.|.:|:.|..|.:.::|....||.|.|||::..:|:
  Rat   443 TSSLLCDCQLKWLPQWVAENNF-QSFVNASCAHPQPLKGRSIFTVSPDGFVCDDFPKPQITVQPE 506

  Fly   726 DMLAVNAANITLECIASSPTAASLAAADELKIKWRHDNQHVQERPAVHDGASTETQIRHDLSTNQ 790
            ...|:..::::..|.|:|.:.:.:..|      |:.||:.:|:         .|.:....|....
  Rat   507 TQSAIKGSDVSFTCSAASSSDSPMTFA------WKKDNEALQD---------AEMENYAHLRAQG 556

  Fly   791 TSIYGY---LRLTNVTYESAGRYQCVVSNAFGTTYAQKFKISIGIHPTFLQVPSNLTLDAGEMAR 852
            ..:..|   |||.||.:.|.||||||:||.||::|:.|.:::|.:.|:|.:.|.:||:.||.|||
  Rat   557 GELMEYTTILRLRNVEFASEGRYQCVISNHFGSSYSVKARLTINMLPSFTKTPMDLTIRAGAMAR 621

  Fly   853 LVCSASGDPTPEIALQKFGGSEFPAATERRLQVIREENAFLITNAKPSDSGIYTCTALSAAGEIK 917
            |.|:|.|.|.|:||.||.||.:||||.|||:.|:.|::.|.|.:.|..|.|:|:|||.::||.:.
  Rat   622 LECAAVGHPAPQIAWQKDGGIDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSVS 686

  Fly   918 VNATLVVNDKPQPSIPLVHQEVVVGRTCVLQCLSETANADFELEHPHREWFKENKPIHISPTAPD 982
            .||||.|.:.|....||:.:.|..|.|.||||::..:      ..|...|.|::.|:.::     
  Rat   687 ANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGS------PPPRLNWTKDDSPLVVT----- 740

  Fly   983 GDRYYFSNNKELLVILNAQSNDAGHFRCEITDNSRTFTLQSELVVVK--------------ENLN 1033
             :|::|:...:||:|:::..:|||.:.||:::...|......|.|:.              :...
  Rat   741 -ERHFFAAGNQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVIPTPTCDSPHMTAPSLDGDG 804

  Fly  1034 WVVLLVGIITVTVICVVVDCCIIWCTLRYQKKKLRMSLAAERHSTQLRPRSLADLGCSYDEANHR 1098
            |..  ||::.:.|:|.||...::|..:.|..::                   .:..||....:..
  Rat   805 WAT--VGVVIIAVVCCVVGTSLVWVVIIYHTRR-------------------RNEDCSITNTDET 848

  Fly  1099 RLTVMSTPPSEQRCLEQGLTLSYL-RQTDLEAQQDHLSSKDSGTGSDAAVKRTLDDFEVAMPSHK 1162
            .|      |::        ..||| .|..|..:||...|.::|:............|   :|.|.
  Rat   849 NL------PAD--------IPSYLSSQGTLADRQDGYISSENGSHHQFVTSSGGGFF---LPQHD 896

  Fly  1163 H----HTDDEEEEEVEEVYEENEPPYIKHTYEVNYAEPEQHLFLQNNNHNYD 1210
            .    |.||..|.:||...:....|::..:..|         :|:.|.:..|
  Rat   897 SAGTCHFDDSSEADVEAAPDPFLCPFVSSSGPV---------YLKGNLYGPD 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 129/351 (37%)
leucine-rich repeat 293..316 CDD:275380 6/22 (27%)
leucine-rich repeat 317..338 CDD:275380 9/21 (43%)
leucine-rich repeat 339..362 CDD:275380 9/22 (41%)
leucine-rich repeat 363..386 CDD:275380 9/22 (41%)
leucine-rich repeat 387..410 CDD:275380 6/23 (26%)
leucine-rich repeat 411..434 CDD:275380 10/22 (45%)
leucine-rich repeat 435..457 CDD:275380 9/22 (41%)
leucine-rich repeat 458..481 CDD:275380 7/22 (32%)
leucine-rich repeat 482..505 CDD:275380 5/22 (23%)
leucine-rich repeat 506..529 CDD:275380 14/22 (64%)
leucine-rich repeat 530..553 CDD:275380 6/22 (27%)
leucine-rich repeat 554..577 CDD:275380 5/22 (23%)
leucine-rich repeat 578..604 CDD:275380 12/25 (48%)
leucine-rich repeat 607..630 CDD:275380 11/22 (50%)
leucine-rich repeat 631..652 CDD:275380 11/20 (55%)
LRRCT 665..712 CDD:214507 16/47 (34%)
Ig_3 717..816 CDD:464046 27/101 (27%)
Ig 835..924 CDD:472250 45/88 (51%)
Ig strand B 851..855 CDD:409353 3/3 (100%)
Ig strand C 864..868 CDD:409353 2/3 (67%)
Ig strand E 890..894 CDD:409353 1/3 (33%)
Ig strand F 904..909 CDD:409353 2/4 (50%)
Ig strand G 917..920 CDD:409353 0/2 (0%)
Ig_3 927..1013 CDD:464046 24/85 (28%)
Lrig3NP_001419387.1 leucine-rich repeat 76..99 CDD:275378 6/22 (27%)
LRR 77..421 CDD:443914 126/348 (36%)
leucine-rich repeat 100..115 CDD:275378 7/14 (50%)
leucine-rich repeat 147..168 CDD:275380 9/22 (41%)
leucine-rich repeat 169..192 CDD:275380 6/22 (27%)
leucine-rich repeat 194..216 CDD:275380 10/22 (45%)
leucine-rich repeat 217..240 CDD:275380 9/22 (41%)
leucine-rich repeat 241..264 CDD:275380 7/22 (32%)
leucine-rich repeat 265..288 CDD:275380 5/22 (23%)
leucine-rich repeat 289..312 CDD:275380 14/22 (64%)
leucine-rich repeat 313..336 CDD:275380 6/22 (27%)
leucine-rich repeat 337..360 CDD:275380 5/22 (23%)
leucine-rich repeat 361..385 CDD:275380 12/25 (48%)
leucine-rich repeat 388..411 CDD:275380 11/22 (50%)
leucine-rich repeat 412..435 CDD:275380 12/22 (55%)
PCC 416..>494 CDD:188093 28/78 (36%)
Ig_3 498..585 CDD:464046 27/101 (27%)
IgI_LRIG1-like 604..694 CDD:409420 45/89 (51%)
Ig strand A 604..607 CDD:409420 1/2 (50%)
Ig strand A' 611..615 CDD:409420 2/3 (67%)
Ig strand B 618..627 CDD:409420 5/8 (63%)
Ig strand C 633..638 CDD:409420 2/4 (50%)
Ig strand C' 641..643 CDD:409420 1/1 (100%)
Ig strand D 651..655 CDD:409420 1/3 (33%)
Ig strand E 659..666 CDD:409420 2/6 (33%)
Ig strand F 672..680 CDD:409420 5/7 (71%)
Ig strand G 683..694 CDD:409420 5/10 (50%)
I-set 697..784 CDD:400151 26/98 (27%)
Ig strand B 714..718 CDD:409353 2/3 (67%)
Ig strand C 727..731 CDD:409353 0/3 (0%)
Ig strand E 750..754 CDD:409353 2/3 (67%)
Ig strand F 764..769 CDD:409353 1/4 (25%)
Ig strand G 777..780 CDD:409353 0/2 (0%)

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