DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and tlr3

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:XP_002934448.3 Gene:tlr3 / 100486223 XenbaseID:XB-GENE-491049 Length:897 Species:Xenopus tropicalis


Alignment Length:678 Identity:155/678 - (22%)
Similarity:274/678 - (40%) Gaps:148/678 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 NDFNKINKLLLITYMLLITAATICQSAAQSPSSSNGNGVGGSGSTGGSPLSALLKSGGASYNQQL 144
            |:|.||::          ...|.|...::...:||     |..:..|:|...|            
 Frog   107 NEFTKISE----------NDFTFCVHLSELHLASN-----GISNIDGNPFEKL------------ 144

  Fly   145 PQQQLFAMLTRNGGGSSGPRSSGGNRGYTSARQHFMALSEDYSDAD-VDEEDMAALHYPLSASHP 208
             :..||..::.|...|    ::.||      :|....|.|.|.::: :.:.:..|..:       
 Frog   145 -ENLLFLDMSHNKMIS----TALGN------KQQLNNLKELYLNSNKISKLNKEAFEF------- 191

  Fly   209 PAGVQGSSSSSGISIQSGSLETNGFVADDGGQYEHAQKALEAAAAAAKASNKYNIDCPKDCKCLN 273
                     .:..|:|...|.:|.....:.|.::    |:.:.||                    
 Frog   192 ---------LANTSLQKLDLSSNPLTEINPGCFQ----AIGSFAA-------------------- 223

  Fly   274 VLFDCDKLHLERVPVLPSYVQTLHLANNKLNDTTVLEIRNL-------LNLTKVSLKRNLLEVI- 330
            ::....:|..:|...:.|.:....:.|..||:..:.:|||.       .|||.:.|..|.|..| 
 Frog   224 LVIQNTQLDPQRTEQVCSELAHTGVRNLTLNNIRLSKIRNTTFKGLADTNLTVLDLSGNSLSQID 288

  Fly   331 -PKFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELN--SFPKSNNLVHLIL 392
             ..|:.|..|:.|.|.||.|:.::.::...|..:|.|:|.::....::|:  ||...:|:.:|.:
 Frog   289 NDSFVSLGALEILNLENNDISHVNPKTFNGLSKVRVLNLRKSLSSNLKLDDLSFQSLHNVQYLNM 353

  Fly   393 SFNEITNVNEHSFATLNNLTDLELSNNRLS--TLPIRVFKNLNQLKKLALNFNQLEINWSTFRGL 455
            ..|:|.::.||:|..|.:||:|.||::.|.  ||..|.|.:|::.....||.        |..||
 Frog   354 EANKIISITEHTFIGLTSLTNLSLSDSTLQQHTLTNRTFLSLSKSPLYHLNL--------TKTGL 410

  Fly   456 ESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQI-SSLSRQGLFNLTKLRHLNLSFNAISRI 519
            ..::|             |.|..:..::.:|:.:||| ..:|...|..|..:..:.||:|....:
 Frog   411 TKIEN-------------GAFLCLKHLQLLDMGLNQIDQEVSGNELEGLANIEMIYLSYNRRITL 462

  Fly   520 EVDTWEFTQSLEVLDLSNNAI--NEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEELN 582
            ..:::.|..||..|.|...|:  .:..|.....|..|..|:|::|.:..:||:.|:.:.||..|:
 Frog   463 TSNSFIFAPSLSKLYLRKTALTFRDLNPSPFKVLQNLTVLDLSNNNIANIQEDVFESLSNLRILS 527

  Fly   583 LRRNRLSWIIEDQSAAAP---FKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASI 644
            ...|.|:.:.::.:...|   .|||:.|.:|.|..|...:|...|..||..|::|::|.|.:..:
 Frog   528 FEHNNLARLWKEANPGGPVLFLKGLKNLEKLSLLSNGFDEIPANAFKGLCKLKVLDIGENNVYIL 592

  Fly   645 QVNAF--EHMLRLNKL---------------VFKSLNFI--------CDCD-LVWFQQWL---KN 680
            ..:.|  :|.|.|..|               ||.||.::        |.|: :.||..||   ..
 Frog   593 PPSVFDDQHSLTLLDLHKNLITSVEQDLFKNVFSSLKYLNMGGNPYDCTCESIAWFASWLNTTNT 657

  Fly   681 RFPQQAEHAVCGYPEHLLDRHLKSLSSS 708
            ..|......:|..|.......:.:..||
 Frog   658 SVPLAHSQYICNTPARYHGNPVDNFDSS 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 101/367 (28%)
leucine-rich repeat 293..316 CDD:275380 6/29 (21%)
leucine-rich repeat 317..338 CDD:275380 8/22 (36%)
leucine-rich repeat 339..362 CDD:275380 7/22 (32%)
leucine-rich repeat 363..386 CDD:275380 6/24 (25%)
leucine-rich repeat 387..410 CDD:275380 7/22 (32%)
leucine-rich repeat 411..434 CDD:275380 11/24 (46%)
leucine-rich repeat 435..457 CDD:275380 5/21 (24%)
leucine-rich repeat 458..481 CDD:275380 3/22 (14%)
leucine-rich repeat 482..505 CDD:275380 7/23 (30%)
leucine-rich repeat 506..529 CDD:275380 4/22 (18%)
leucine-rich repeat 530..553 CDD:275380 6/24 (25%)
leucine-rich repeat 554..577 CDD:275380 7/22 (32%)
leucine-rich repeat 578..604 CDD:275380 6/28 (21%)
leucine-rich repeat 607..630 CDD:275380 8/22 (36%)
leucine-rich repeat 631..652 CDD:275380 5/22 (23%)
LRRCT 665..712 CDD:214507 11/56 (20%)
Ig_3 717..816 CDD:464046
Ig 835..924 CDD:472250
Ig strand B 851..855 CDD:409353
Ig strand C 864..868 CDD:409353
Ig strand E 890..894 CDD:409353
Ig strand F 904..909 CDD:409353
Ig strand G 917..920 CDD:409353
Ig_3 927..1013 CDD:464046
tlr3XP_002934448.3 PRK15370 <17..>158 CDD:185268 15/78 (19%)
leucine-rich repeat 54..74 CDD:275380
leucine-rich repeat 75..98 CDD:275380
LRR <95..428 CDD:443914 89/419 (21%)
leucine-rich repeat 99..122 CDD:275380 6/24 (25%)
leucine-rich repeat 123..146 CDD:275380 6/40 (15%)
leucine-rich repeat 147..170 CDD:275380 7/32 (22%)
leucine-rich repeat 171..196 CDD:275380 4/40 (10%)
leucine-rich repeat 197..230 CDD:275380 7/56 (13%)
leucine-rich repeat 231..273 CDD:275380 9/41 (22%)
leucine-rich repeat 274..297 CDD:275380 8/22 (36%)
leucine-rich repeat 298..319 CDD:275380 6/20 (30%)
leucine-rich repeat 322..347 CDD:275380 6/24 (25%)
PPP1R42 336..531 CDD:455733 58/215 (27%)
leucine-rich repeat 348..371 CDD:275380 7/22 (32%)
leucine-rich repeat 424..448 CDD:275380 7/23 (30%)
PPP1R42 446..637 CDD:455733 49/190 (26%)
leucine-rich repeat 449..472 CDD:275380 4/22 (18%)
leucine-rich repeat 473..498 CDD:275380 6/24 (25%)
leucine-rich repeat 499..522 CDD:275380 7/22 (32%)
leucine-rich repeat 523..554 CDD:275380 8/30 (27%)
leucine-rich repeat 555..578 CDD:275380 8/22 (36%)
leucine-rich repeat 579..602 CDD:275380 5/22 (23%)
leucine-rich repeat 603..623 CDD:275380 3/19 (16%)
PCC 607..>689 CDD:188093 16/79 (20%)
Tlr3_TMD 691..720 CDD:465595
TIR 746..890 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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