DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8399 and l(2)34Fc

DIOPT Version :10

Sequence 1:NP_001286472.1 Gene:CG8399 / 36768 FlyBaseID:FBgn0034067 Length:656 Species:Drosophila melanogaster
Sequence 2:NP_609710.1 Gene:l(2)34Fc / 34838 FlyBaseID:FBgn0261534 Length:159 Species:Drosophila melanogaster


Alignment Length:169 Identity:45/169 - (26%)
Similarity:83/169 - (49%) Gaps:19/169 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LVTALLAVAIWPDPGQSLPQGAPETVCDTMLPFHSGGSVLPQNSVSPFSVETSSSTLGQGQTLRV 78
            ::.|.||:::     .:...|||:..|..:.|.|  |:.| |.:..|:|: :..|.:...|.|.:
  Fly     6 VLAACLAISV-----HAYSDGAPKAACRDLTPQH--GAKL-QVTKPPYSI-SGPSHVRSDQKLTL 61

  Fly    79 DLTGVPAGLSFGGYMIQARNRNPPHQIIGQFGPARDGTIKLMNCENSVNNSATHSNA---GPKQQ 140
            .|    .|..|.|:|||||:..  ::::|||........:.::|... :::.||.:|   .|...
  Fly    62 TL----GGDEFLGFMIQARDGQ--NRVVGQFQVVDSVHSQTLDCSGK-DDTITHLSAQKGKPLTG 119

  Fly   141 VILEWQSPVDFLGQVVFNATIAQSYNEFWVGVPSQPVQI 179
            :..:|..|..:.|.|.|.||:.|:...:|||..::.:.:
  Fly   120 ITFDWIPPAGYKGNVKFMATVVQTGFVYWVGRVTKDIDV 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8399NP_001286472.1 Reeler 40..170 CDD:460411 36/132 (27%)
DOMON_SDR_2_like 223..392 CDD:187686
Cyt_b561_FRRS1_like 358..553 CDD:176490
l(2)34FcNP_609710.1 Reeler 27..149 CDD:460411 36/132 (27%)
Blue background indicates that the domain is not in the aligned region.

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