DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8388 and znf335

DIOPT Version :10

Sequence 1:NP_611075.1 Gene:CG8388 / 36763 FlyBaseID:FBgn0034062 Length:572 Species:Drosophila melanogaster
Sequence 2:XP_005167155.1 Gene:znf335 / 100148891 ZFINID:ZDB-GENE-130530-814 Length:1534 Species:Danio rerio


Alignment Length:556 Identity:132/556 - (23%)
Similarity:194/556 - (34%) Gaps:143/556 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 KRRRGRPRKVAQQDAREELKSVLEQINLNEIKIEFPEADLTIADVLEDQEEQDFLPDDCISKEGA 175
            ||.||||||       .|.|:....:...|.:.|..|.|:..|..|:||.:.|:.|.|    |.|
Zfish   501 KRGRGRPRK-------SESKAGAVVVVKKEEQPEEEEDDIVDAGALDDQGDSDYKPAD----EEA 554

  Fly   176 ED----------PEVLEKKPPTLKRKVSGRSRG--RRRVQLAERP-------------------- 208
            ..          |......|.:..||...|..|  |:.:..:|.|                    
Zfish   555 RSRLAVSHFTPPPSCSSSSPASTSRKRPRRMVGPPRKFLPDSESPAAPSETNNTEDPQAPEEASS 619

  Fly   209 --------------------------------NTS-----CLPKIQKSQEFNDYIREHYKVQCHI 236
                                            |||     .||| ::.:....::::.||..   
Zfish   620 SGLDNGSSSFSNGTEVEPGVSQSDSENRDPSSNTSPDDLEFLPK-KRGRPSKRFLQKKYKKY--- 680

  Fly   237 CNLPMEDFSEMLAHVRREHKQRGYAMCCNRKFLKRGVLVDHLRRHQ--DPETFKCSICGRVMGHR 299
              :....:...|..:.|.|.    ...|..:||.:..|..|:..|:  |||.:||..|.......
Zfish   681 --MNRNKYYRSLKPLLRPHN----CWICGSRFLSQEDLKFHVDSHEGNDPERYKCLQCSYRCKRW 739

  Fly   300 RSLELHMRMHEIKSRGRLYRCEQCSKAFYSAVVYE---RHKLTHIPREQWKV------------- 348
            .||:.||..||   ..:.|:||.|.   |::|..:   ||...|...:..|:             
Zfish   740 SSLKEHMFNHE---GTKPYKCEMCD---YTSVYKKDVTRHSAVHNKSKSRKIDVSCVNPSQVSKV 798

  Fly   349 ---PCTHCEKTYPSQYTMQQHVKLVHLNLYAKICDVCGKSIRGREALARHMEEHTGG-PQAAIKC 409
               ||..|.:.||.|..:.||:| .|......:||.||||.:.|.....|:..|... ..:..||
Zfish   799 SEFPCPICSRVYPMQKRLTQHMK-THSTEKPHMCDKCGKSFKKRYTFKMHLLTHIQNCGNSLFKC 862

  Fly   410 HLCDSMLTTKYGLARHIKMMHTAENLQPMQCEFCLKICPSLQAHQHHIKYTHNTARSHQCPMCEK 474
            ..||.....|..|..| ::.||  |.:|.:||.|............||...|...:...|.||..
Zfish   863 EFCDYTCNDKKHLLNH-QLSHT--NDKPFKCEECKYSTSKEDFLVSHIAIKHTGEKPFSCEMCHF 924

  Fly   475 AFKRPNELKEHMTTHTGEVLYTCPHCPQTFNSNANMHAHRKKVHRKEW-----EENRHKRLNRSR 534
            ..:....|:.|:         .|.| |:||...:..|.. :.|.|::.     |:....||....
Zfish   925 TTRHRKNLRLHV---------QCRH-PETFEEWSRTHPD-EPVRRRQTPVFTVEQIEELRLQHET 978

  Fly   535 K--SDTIIAVSVRKTTETRQDGG--LVPAEAIATTS 566
            :  ..||:.|. ..|.:|.:..|  .|..:|:..|:
Zfish   979 QEFQGTIVTVD-PLTLQTMESIGNTSVSQDALGNTT 1013

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8388NP_611075.1 zf-AD 3..78 CDD:462262
C2H2 Zn finger 264..281 CDD:275368 5/16 (31%)
C2H2 Zn finger 289..309 CDD:275368 6/19 (32%)
C2H2 Zn finger 320..340 CDD:275368 7/22 (32%)
C2H2 Zn finger 350..369 CDD:275368 7/18 (39%)
C2H2 Zn finger 440..461 CDD:275368 5/20 (25%)
C2H2 Zn finger 469..489 CDD:275368 5/19 (26%)
C2H2 Zn finger 497..515 CDD:275368 6/17 (35%)
znf335XP_005167155.1 COG5048 <592..838 CDD:227381 56/262 (21%)
C2H2 Zn finger 699..719 CDD:275368 5/19 (26%)
C2H2 Zn finger 729..749 CDD:275368 6/19 (32%)
zf-H2C2_2 741..766 CDD:463886 11/30 (37%)
zf-H2C2_5 755..779 CDD:404746 9/26 (35%)
C2H2 Zn finger 803..823 CDD:275368 8/20 (40%)
zf-H2C2_2 815..840 CDD:463886 10/25 (40%)
C2H2 Zn finger 831..851 CDD:275368 8/19 (42%)
C2H2 Zn finger 862..882 CDD:275368 6/20 (30%)
C2H2 Zn finger 890..911 CDD:275368 5/20 (25%)
C2H2 Zn finger 919..936 CDD:275368 4/16 (25%)
rne <1073..1165 CDD:236766
C2H2 Zn finger 1215..1235 CDD:275370
SFP1 <1236..1320 CDD:227516
C2H2 Zn finger 1243..1263 CDD:275368
zf-H2C2_5 1269..1293 CDD:404746
C2H2 Zn finger 1271..1291 CDD:275368
zf-H2C2_2 1283..1308 CDD:463886
C2H2 Zn finger 1299..1320 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.