DRSC/TRiP Functional Genomics Resources

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Protein Alignment: sli and Lrrc3

Sequence 1:NP_001261017.1 Gene:sli FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_660134.1 Gene:Lrrc3 MGIID:2447899 Length:257 Species:Mus musculus

Alignment Length:217 Identity:61/218 (28%)
Similarity:85/218 (39%) Gaps:67/218 (31%)


  Fly   535 GEC-------RMDSDCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD 588
            |.|       |:.:.||..|.|.    ...|.|:.|||:|||||||..|..|.|:.|.:.|: .:
Mouse    18 GSCFFILFCLRLGASCPQACQCPDHAGAVAVHCSSRGLQEIPRDIPADTVLLKLDANRISRV-PN 81

  Fly   589 GLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 652
            |.|..||.|.:|:|..|.:..|.|.||.| |..::.|.|..|:|:.|..                
Mouse    82 GAFQHLPQLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPK---------------- 130

  Fly   653 NQISCVMPGSFEHLNSLTS-LNLASNPFNCNCHLAWFAEWLRK---------------------- 694
                       :.|..|:: :.|:.||.:|.|.|. .|.|..|                      
Mouse   131 -----------DALGKLSAKIRLSHNPLHCECALQ-EALWELKLDPDSVDEIACHTSAQEQFVGK 183

  Fly   695 ---KSLNGGAARCGAPSKVRDV 713
               :.|:.||:.|....|..||
Mouse   184 PLIQVLDSGASFCSTHRKTTDV 205

Known Domains:


GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 leucine-rich repeat 126..149 CDD:275380
LRR_8 149..208 CDD:290566
leucine-rich repeat 150..173 CDD:275380
leucine-rich repeat 174..197 CDD:275380
LRR_8 197..256 CDD:290566
leucine-rich repeat 198..221 CDD:275380
leucine-rich repeat 222..245 CDD:275380
leucine-rich repeat 246..371 CDD:275380
LRRCT 254..303 CDD:214507
LRRNT 319..350 CDD:214470
LRR_8 349..406 CDD:290566
LRR_4 371..411 CDD:289563
leucine-rich repeat 372..395 CDD:275380
leucine-rich repeat 396..415 CDD:275380
leucine-rich repeat 420..443 CDD:275380
leucine-rich repeat 444..465 CDD:275380
leucine-rich repeat 468..480 CDD:275378
LRRCT 476..525 CDD:214507
leucine-rich repeat 484..545 CDD:275380 5/17 (29%)
LRRNT 542..574 CDD:214470 17/36 (47%)
leucine-rich repeat 552..570 CDD:275380 12/18 (67%)
leucine-rich repeat 572..596 CDD:275380 9/24 (38%)
LRR_RI <574..>678 CDD:238064 27/106 (25%)
LRR_8 595..655 CDD:290566 16/61 (26%)
leucine-rich repeat 597..620 CDD:275380 10/24 (42%)
leucine-rich repeat 621..644 CDD:275380 5/23 (22%)
leucine-rich repeat 645..668 CDD:275380 1/23 (4%)
leucine-rich repeat 669..756 CDD:275380 17/72 (24%)
LRRCT 677..726 CDD:214507 15/63 (24%)
LRRNT 739..770 CDD:214470
leucine-rich repeat 757..791 CDD:275380
LRRNT 73..103 CDD:214470
leucine-rich repeat 83..104 CDD:275380
LRR_8 102..160 CDD:290566
leucine-rich repeat 105..125 CDD:275380
LRR_RI <119..259 CDD:238064
LRR_4 770..807 CDD:289563
LRR_8 790..850 CDD:290566
LRR_4 791..830 CDD:289563
leucine-rich repeat 792..815 CDD:275380
LRR_4 814..863 CDD:289563
leucine-rich repeat 816..839 CDD:275380
leucine-rich repeat 840..861 CDD:275380
LRRCT 872..920 CDD:214507
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
Lrrc3NP_660134.1 LRRNT 33..68 CDD:214470 17/35 (49%)
leucine-rich repeat 48..68 CDD:275378 13/20 (65%)
LRR 1 65..86 7/22 (32%)
LRR_8 69..125 CDD:290566 21/57 (37%)
LRR_4 69..105 CDD:289563 13/37 (35%)
leucine-rich repeat 69..89 CDD:275378 8/21 (38%)
LRR_4 88..129 CDD:289563 16/41 (39%)
LRR 2 89..110 8/21 (38%)
leucine-rich repeat 90..114 CDD:275378 10/24 (42%)
LRR 3 114..135 6/48 (13%)
leucine-rich repeat 115..138 CDD:275378 7/50 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG4237
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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