DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk5 and cdkl1

DIOPT Version :10

Sequence 1:NP_477080.1 Gene:Cdk5 / 36727 FlyBaseID:FBgn0013762 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_001003773.1 Gene:cdkl1 / 445316 ZFINID:ZDB-GENE-040808-34 Length:350 Species:Danio rerio


Alignment Length:288 Identity:114/288 - (39%)
Similarity:165/288 - (57%) Gaps:3/288 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQKYDKMEKIGEGTYGTVFKGRNRDTMEIVALKRVRLDEDDEGVPSSALREICLLKELKHKNIVR 65
            |:||:|:.|||||:||.|||.||:||.:|||:|:....|||..:...|||||.:||:|||.|:|.
Zfish     1 MEKYEKISKIGEGSYGVVFKCRNKDTGQIVAIKKFVESEDDPIIKKIALREIRMLKQLKHPNLVN 65

  Fly    66 LIDVLHSDKKLTLVFEHCDQDLKKYFDSLNGEIDMAVCRSFMLQLLRGLAFCHSHNVLHRDLKPQ 130
            |::|....:||.||||:||..:....|.....:...:.:|.:.|.|:.:.|||..|.:|||:||:
Zfish    66 LMEVFRRKRKLHLVFEYCDHTVLNELDRYPRGVPEHMVKSIIWQTLQAVNFCHKQNCIHRDVKPE 130

  Fly   131 NLLINKNGELKLADFGLARAFGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCILAEL 195
            |:||.|:..:||.|||.||....|...|:..|.|.|||.|::|.|...|...:|:|:.||:.|||
Zfish   131 NILITKHQVIKLCDFGFARILTGPCDYYTDCVATRWYRAPELLVGDTQYGPPVDVWAVGCVFAEL 195

  Fly   196 ADAGRPLFPGSDVLDQLMKIFRVLG--TPNEDSWPGVSHLSDYVALPSFPAITSWSQLVPRLNSK 258
            . :|.||:||...:|||..|.:.||  .|........:.....|.:|....:.......|.|:.:
Zfish   196 L-SGAPLWPGKSDVDQLYLIRKTLGELIPRHQQVFSTNQFFSGVCVPEPQEMEPLELKYPNLSYQ 259

  Fly   259 GRDLLQKLLICRPNQRISAEAAMQHPYF 286
            ...|::..|...|.:|:|.|..::.|||
Zfish   260 ALSLMKGCLRMDPAERLSCEQLLEQPYF 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk5NP_477080.1 STKc_CDK5 3..286 CDD:143344 111/284 (39%)
cdkl1NP_001003773.1 STKc_CDKL1_4 2..287 CDD:270837 111/285 (39%)
[NKR]KIAxRE 45..51 2/5 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 293..318
Blue background indicates that the domain is not in the aligned region.

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