DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8079 and rbm6

DIOPT Version :10

Sequence 1:NP_611023.1 Gene:CG8079 / 36689 FlyBaseID:FBgn0034002 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_005166176.2 Gene:rbm6 / 567058 ZFINID:ZDB-GENE-050309-79 Length:1448 Species:Danio rerio


Alignment Length:514 Identity:117/514 - (22%)
Similarity:182/514 - (35%) Gaps:137/514 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 ASQATESELQECQYSMENDEDTNKKDQP--NDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSG 138
            :|..|:..:...:.::.....|.::..|  :|.:.:.|...:|.....:: |.:|:.|:|:.|||
Zfish  1022 SSSLTQGVMYSNKSAIAQTVQTAEQQAPALSDAAVSGAADSIDGYNYGSE-APDLSAFLYDATSG 1085

  Fly   139 MYYDPKTGYYYNAEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQANDAAK-PESEDEDLEVQFD 202
            .||||:|..||:.....:||..|..|..:|.:..:|   ...|..:.|... ||....::.....
Zfish  1086 FYYDPQTTLYYDPNSRYFYDAQNQQYLYWDSSLKTY---IPVQSSSTDGQNVPEVPAPEVPAPVT 1147

  Fly   203 ELGGVITDHETLKKIKAEKQKAKDQA-------EKSKRKAKKKKSKKHSKKRSKKERRHKSKKRH 260
            .:..||.     ..||.|:.||..:|       |:..::.:|::.:|..|.||.  ...|..|  
Zfish  1148 PVAEVIA-----VPIKEEEAKAVSEALPEVRVEEEPGQRGEKREKEKEEKPRSL--AAFKIMK-- 1203

  Fly   261 RHSDDERSNDAEEGELSQSSDSSS--------DSSNEDSSSNTEDSSVPVFKAAGRFQDIAKK-- 315
                     |.|.....|:|...|        .|.::...|...|::..:|:......::.||  
Zfish  1204 ---------DMERWAKIQNSKKESVRAPSPVLKSGDDHRPSKAADAAFAIFERKTGADELFKKPL 1259

  Fly   316 YPPSLRIIVQETNVESLK--VGSLHLIT--YKGGS-LGREGAHDVIIPDVNVSKCHLKFKYENKL 375
            .||      ::.:.:|.|  :|||.::.  |..|| ...|..||               |.|   
Zfish  1260 APP------KQKDEKSSKRPMGSLGMLAADYGAGSDEEEEEKHD---------------KQE--- 1300

  Fly   376 GIYQCLDLGSRNGTILNGSPMSSDAMDLVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSP 440
                    .||..   ...|.:.:..|            ||   .......|.||.     ...|
Zfish  1301 --------ASRPA---KSQPQADEKED------------RL---TDWKKMACLLCR-----RQFP 1334

  Fly   441 PVVAAVASSTASVLSHKEQLK---KLQRK----YGLEN-EKFVDTSGNGQSNYNDRAATRRVQVG 497
            ...|.:.....|.| ||:.::   |::|.    ..||| ||.:.|...|.|....|...:....|
Zfish  1335 NKDALIRHQQLSDL-HKQNMEIHLKIKRSKRELEALENQEKEMKTKAPGSSPEAKRRKPQNTWAG 1398

  Fly   498 SSTDKEKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINVVANEGT 556
            ||.|..|          ||...|      ||.:..|:..|        ||  ||.|..|
Zfish  1399 SSRDSFK----------GSERPG------LGLETTERKKK--------EP--VVWNHAT 1431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8079NP_611023.1 OCRE_VG5Q 124..177 CDD:293883 20/52 (38%)
OCRE repeat 1 129..136 CDD:293883 2/6 (33%)
OCRE repeat 2 137..144 CDD:293883 5/6 (83%)
OCRE repeat 3 145..152 CDD:293883 3/6 (50%)
OCRE repeat 4 153..159 CDD:293883 1/5 (20%)
OCRE repeat 5 162..169 CDD:293883 1/6 (17%)
FHA_AGGF1 316..433 CDD:438738 24/121 (20%)
G-patch 516..560 CDD:396249 12/41 (29%)
rbm6XP_005166176.2 RRM_SF 688..765 CDD:473069
RRM_SF 870..954 CDD:473069
OCRE_RBM5_like 1072..1125 CDD:293881 20/55 (36%)
OCRE repeat 1 1076..1083 CDD:293881 2/6 (33%)
OCRE repeat 2 1084..1091 CDD:293881 5/6 (83%)
OCRE repeat 3 1092..1099 CDD:293881 3/6 (50%)
OCRE repeat 4 1100..1107 CDD:293881 2/6 (33%)
OCRE repeat 5 1109..1116 CDD:293881 1/6 (17%)
Blue background indicates that the domain is not in the aligned region.

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