DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8079 and Rbm6

DIOPT Version :10

Sequence 1:NP_611023.1 Gene:CG8079 / 36689 FlyBaseID:FBgn0034002 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_035381.2 Gene:Rbm6 / 19654 MGIID:1338037 Length:1118 Species:Mus musculus


Alignment Length:514 Identity:106/514 - (20%)
Similarity:164/514 - (31%) Gaps:193/514 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 DTNKKDQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYNAEYGLYYDGN 160
            |||::.|.   |::|.                   ::|:.|:|.||||..        |.|||.|
Mouse   774 DTNRQGQQ---SSSDC-------------------YIYDSTTGYYYDPLA--------GTYYDPN 808

  Fly   161 NGCYYSYDHAKDSYEFHSQAQVQANDAAKPESEDEDLEVQFDELGGVITDHETLKKIKAEKQKAK 225
                             :|.:|..  ...|||.||:                   :||       
Mouse   809 -----------------TQQEVYV--PQDPESPDEE-------------------EIK------- 828

  Fly   226 DQAEKSKRKAKKKKSKKHSKKRSKKERRHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNED 290
               ||......|..|||.:.||..||::.:...:.:.|..|.....|:                 
Mouse   829 ---EKKSTSQGKSNSKKETSKRDGKEKKDRGMTKFQESTSEGKPPLED----------------- 873

  Fly   291 SSSNTEDSSVPVFKAAGRFQDIAKKYPPSLRIIVQET----NVESLKVGSLHLITYKGGSLGREG 351
                       |||         |..||:::  .:|:    .|.:..:|.|.  .|.|.|...|.
Mouse   874 -----------VFK---------KPLPPTVK--KEESPPPPKVVNPLIGLLG--EYGGDSDYEEE 914

  Fly   352 AHDVIIPDVNVSKCH-----LKFKYE-------NKLGIYQCLDLGSRNGTILNGSPMSSDAMDLV 404
            ..:...|.|......     .|.:.|       |||....|                   .....
Mouse   915 EEEEQAPPVQPRTAQPREEMTKKENEDDKLTDWNKLACLLC-------------------RRQFP 960

  Fly   405 HGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASSTASVLSHKEQLKKLQRKYGL 469
            :..|:|..|.  |..:|:.|         |.|..             .:...:::|..|:|:   
Mouse   961 NKEVLTKHQQ--LSDLHKQN---------LEIHR-------------KIKQSEQELAYLERR--- 998

  Fly   470 ENEKFVDTSGNGQS---NYNDRAATRRVQVGSSTDKEKTEVACVNTEIGSSNKGFKMLSKLGWQK 531
            |.|......||.:.   ...|....:|::....||.::..|...:|:  :|:||.......||:|
Mouse   999 EREGRFKEKGNDRREKLQSFDSPERKRIKYSRETDSDRNPVDKEDTD--TSSKGGCAQQATGWRK 1061

  Fly   532 GEKLGKTNASAGLLEPINVVANEG-TSGLGNSDPVLSSSRTIDKR-KLANLKITQARYQ 588
            |..||.::...|..|.|     || ..|.|...|..:|.|..::. :.|..::..|||:
Mouse  1062 GAGLGYSHPGLGSSEEI-----EGRMRGPGGGPPGRTSKRQSNETYRDAVRRVMFARYK 1115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8079NP_611023.1 OCRE_VG5Q 124..177 CDD:293883 12/52 (23%)
OCRE repeat 1 129..136 CDD:293883 1/6 (17%)
OCRE repeat 2 137..144 CDD:293883 4/6 (67%)
OCRE repeat 3 145..152 CDD:293883 0/6 (0%)
OCRE repeat 4 153..159 CDD:293883 3/5 (60%)
OCRE repeat 5 162..169 CDD:293883 0/6 (0%)
FHA_AGGF1 316..433 CDD:438738 24/132 (18%)
G-patch 516..560 CDD:396249 15/44 (34%)
Rbm6NP_035381.2 YjbI 94..259 CDD:440968
RRM1_RBM6 456..533 CDD:409753
RRM2_RBM6 651..737 CDD:409979
OCRE_RBM6 763..828 CDD:293882 25/121 (21%)
OCRE repeat 1 769..776 CDD:293882 1/1 (100%)
OCRE repeat 2 785..792 CDD:293882 2/25 (8%)
OCRE repeat 3 793..800 CDD:293882 4/6 (67%)
OCRE repeat 4 801..808 CDD:293882 4/14 (29%)
OCRE repeat 5 811..818 CDD:293882 1/8 (13%)
G-patch 1046..>1079 CDD:396249 12/37 (32%)
Blue background indicates that the domain is not in the aligned region.

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