DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lap1 and scrib

DIOPT Version :10

Sequence 1:NP_611007.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:XP_073762319.1 Gene:scrib / 368473 ZFINID:ZDB-GENE-030616-572 Length:1854 Species:Danio rerio


Alignment Length:931 Identity:274/931 - (29%)
Similarity:399/931 - (42%) Gaps:202/931 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KCFPCFKFKRE-EVIDKLDYSNTPLTDFPEVWQHERTLEELYLSTTRLQALPPQLFYCQGLRVLH 69
            ||.|.::..|. |.:||...|.|.:.|  |::::.|:||||.|...:|:.||...|....||.|.
Zfish     3 KCIPLWRCNRHVESVDKRHCSLTAVPD--EIYRYNRSLEELLLDANQLRELPKPFFRLHNLRKLG 65

  Fly    70 VNSNNLESIPQAIGSLRQLQHLDLNRNLIVNVPEEIKSCKHLTHLDLSCNSLQRLPDAITSLISL 134
            ::.|.::.:|..:.:..||..||::||.|..:||.||.|:.|...|.|.|.|.||||..|.|..|
Zfish    66 LSDNEIQKLPPDVANFTQLVELDISRNDISEIPENIKFCQSLEIADFSGNPLTRLPDGFTQLRGL 130

  Fly   135 QELLLNETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVGE 199
            ..|.||:..|:.||.:.|.|.||..||||.|.|.:||.|:..|:.|::||:|.|....||:.:|.
Zfish   131 AHLSLNDVSLQSLPNDIGNLSNLVTLELRENLLKSLPSSLSFLVKLEQLDLGSNVLEVLPDTLGA 195

  Fly   200 LKSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAFPF 264
            |.:|||||:|.||:..:...:|.||.|...:.:.|.|..||:|:|....:..|.:..|.||..|.
Zfish   196 LPNLRELWLDRNQLSSLPPELGNLRQLVCLDVSENRLSELPTEISGLIALTDLLLSENLLEILPD 260

  Fly   265 SVGMLKSLVTFKCESNGLTELPDSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLFADDNQLR 329
            |:|.||.|...|...|.|..|.|||...|.|.||:|:.|.|..||.::|.|:.|..|..|.|:|.
Zfish   261 SIGSLKKLSILKVNQNRLVHLTDSIGECENLTELMLTENLLQSLPRSLGKLKKLTNLNVDRNRLS 325

  Fly   330 QLPDELCSCQQLSVLSVANNQLSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSD 394
            .:|.||..|..|:|||:.:|:|..||..:.|.:::.||:|..|.:..||.::.|| ||.:|||::
Zfish   326 SVPAELGGCVSLNVLSLRDNRLGKLPPELANATELHVLDVAGNRLQNLPFALANL-NLKAMWLAE 389

  Fly   395 NQSQPLVPLQYLD--ASTKTQLTCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQQQPHASPSRRI 457
            |||||::..|..|  .:.:..|||::||                          |||.:|     
Zfish   390 NQSQPMLKFQTEDDEQTGEKVLTCYLLP--------------------------QQPSSS----- 423

  Fly   458 CFAEEATILSNAKAQPAPNYPSFVAAPPTPT-------------------PDQMAGSVR--LMRS 501
                    |.|...:      |...|.||.|                   .|:.|...|  |.|.
Zfish   424 --------LENLLER------SVDEAWPTDTNLNRVSVIQFRDDSKHEEEDDETAADKRQGLQRR 474

  Fly   502 PTPYPKELRQMSKYVRQAQAATSSANASEVREARVVTNGQIHCDSNNANQDVVDQATTSAIYGIA 566
            .||:|.||:.|...:...:....:|...|..|:......::...||.::......:||||     
Zfish   475 ATPHPSELKVMKNVIEARRNEAYTARPDEDLESPDAEEKRLSGLSNQSHDSQASSSTTSA----- 534

  Fly   567 PETTHIYGVYQQPQQMAHPVPTQEYYGLPLVNYEAHYQQLY-------VEANTPLPTTHL----- 619
              |:|                 ::..|:.....|.:..|:.       :|.....||.|.     
Zfish   535 --TSH-----------------EDKQGINSTGVELNDGQVQEEEDLDEMEVEYTEPTVHFAEEPI 580

  Fly   620 ----NGDQDY-----------ELQPLQQQPMQQQAL---PTPRLE--------PPPYHIARVY-- 656
                :.|.||           |:......|.::|.|   .||..:        |.|..:|.:.  
Zfish   581 IRGGDEDDDYDNDDDDAERSDEVSQTPSFPAEKQRLIRKDTPHYKKHFKITKLPKPETVAALLQG 645

  Fly   657 --------TKKTPEDLNLYESMRQRKQQQQLQEQTIYQDALNSNSNFKTTAIGAQDVEESVDQLD 713
                    |..||      |:.|..:..::.:|....:|.|::....:..|...:|:..|     
Zfish   646 FSHDGLSPTAHTP------ENERDGEDDEEEEEDEDEEDDLHTPFQHRLDAAELEDIRMS----- 699

  Fly   714 YQNNIS------------NNLEPNPEE-EDQELDDTMSQHSLNSTATNNTSKASHKKSTWIFGVH 765
             |.|.|            |||...|.. |::||  |:|  .|..|.....|.|..|.||...|  
Zfish   700 -QMNSSLQPVKGVSFDQVNNLLIEPARIEEEEL--TLS--ILRQTGGLGISIAGGKGSTPYKG-- 757

  Fly   766 KNPTVKQVTLKWENSIGFDIAELLNQVGIFVSSITPNTNAARL-LNLNDKLLEIDGYDLTNANLS 829
                                    :..|||:|.::....|||. :.:.|||||::|.||..|...
Zfish   758 ------------------------DDEGIFISRVSEEGPAARAGVKVGDKLLEVNGVDLHGAEHH 798

  Fly   830 DAKRVLLNCG--TVMNIMLSR 848
            .|...|.|.|  .||.::..|
Zfish   799 TAVEALRNSGAAVVMTVLRER 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_611007.1 LRR 12..407 CDD:443914 159/395 (40%)
leucine-rich repeat 21..41 CDD:275380 5/19 (26%)
leucine-rich repeat 42..64 CDD:275380 9/21 (43%)
leucine-rich repeat 65..87 CDD:275380 5/21 (24%)
leucine-rich repeat 88..110 CDD:275380 11/21 (52%)
leucine-rich repeat 111..133 CDD:275380 11/21 (52%)
leucine-rich repeat 134..156 CDD:275380 9/21 (43%)
leucine-rich repeat 157..179 CDD:275380 11/21 (52%)
leucine-rich repeat 180..202 CDD:275380 9/21 (43%)
leucine-rich repeat 203..225 CDD:275380 10/21 (48%)
leucine-rich repeat 226..248 CDD:275380 7/21 (33%)
leucine-rich repeat 272..294 CDD:275380 8/21 (38%)
leucine-rich repeat 295..317 CDD:275380 10/21 (48%)
leucine-rich repeat 318..340 CDD:275380 9/21 (43%)
leucine-rich repeat 364..386 CDD:275380 8/21 (38%)
PDZ_canonical 778..846 CDD:467153 22/70 (31%)
scribXP_073762319.1 None

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