DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn6 and psmd11

DIOPT Version :10

Sequence 1:NP_725412.2 Gene:Rpn6 / 36638 FlyBaseID:FBgn0028689 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_002935612.1 Gene:psmd11 / 100492225 XenbaseID:XB-GENE-922608 Length:422 Species:Xenopus tropicalis


Alignment Length:424 Identity:287/424 - (67%)
Similarity:348/424 - (82%) Gaps:4/424 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 MAGATL--FERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGILQQGELYKQEGKA 80
            ||.|.:  |:|||.:...:|......|.:.:.||.:  |:|||.:|:|||.||:.|.|..:.|:|
 Frog     1 MAAAAVIEFQRAQEMLVSDRAASIDILQSIVKRDIQ--ESDEEALRVKEQSILELGGLLAKTGQA 63

  Fly    81 KELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 145
            .||..|:|..||||:||||||||:|||||:|:||||:|.||.||:||.:||||||.||||||||:
 Frog    64 AELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKAEKRTFLRQA 128

  Fly   146 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 210
            |||||::|||||..|.|||.||:||||||||:|||.|||||||||||||||||||||||||||||
 Frog   129 LEARLVSLYFDTKRYQEALQLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSA 193

  Fly   211 RTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK 275
            ||||||||||||:|.|||:||||:|||:|:|:|||:|||||||||.||:||.||:|:||||||||
 Frog   194 RTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGNDSIDSPKAITALKYMLLCK 258

  Fly   276 IMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHL 340
            |||...:||..|||||||:.|:||..:|:|.||:||..||||:|:.||.:||.||.:|.|:..||
 Frog   259 IMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLANFEKALTDYKAELRDDPIISTHL 323

  Fly   341 GTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVF 405
            ..|||.:|||||.|:|||:||||:.|::..|:||.|:||:|||||||||||.|||||||||||:|
 Frog   324 AKLYDNLLEQNLIRVIEPFSRVQIDHISSLIKLPKPEVERKLSQMILDKKFHGILDQGEGVLIIF 388

  Fly   406 EETPVDKTYERVLETIQSMGKVVDTLYQKAKKLS 439
            :|.|||||||..|||||:|.||||:||.|||||:
 Frog   389 DEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn6NP_725412.2 RPN6 18..438 CDD:227488 285/421 (68%)
psmd11XP_002935612.1 RPN6 24..421 CDD:227488 277/398 (70%)

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