DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc1 and Arc2

DIOPT Version :10

Sequence 1:NP_610955.1 Gene:Arc1 / 36595 FlyBaseID:FBgn0033926 Length:254 Species:Drosophila melanogaster
Sequence 2:NP_610956.1 Gene:Arc2 / 36597 FlyBaseID:FBgn0033928 Length:193 Species:Drosophila melanogaster


Alignment Length:515 Identity:515/515 - (100%)
Similarity:515/515 - (100%) Gaps:0/515 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHRAPVVNMLKKEKPMLSVAAIIQAQGRWDRSLAGLAGFDAALVGHMGPLSPPDLKPDLKPDISL 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly     1 MHRAPVVNMLKKEKPMLSVAAIIQAQGRWDRSLAGLAGFDAALVGHMGPLSPPDLKPDLKPDISL 65

  Fly    66 LNGSGGGPFSPGNNCGPGSPGSGGFNSVVLQQQNALVVGGALGNGTGQQNLLVGGGSQQQQQQQQ 130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly    66 LNGSGGGPFSPGNNCGPGSPGSGGFNSVVLQQQNALVVGGALGNGTGQQNLLVGGGSQQQQQQQQ 130

  Fly   131 QQGSNGGGGGSGPNTPSNITQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVR 195
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   131 QQGSNGGGGGSGPNTPSNITQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVR 195

  Fly   196 KDLSYACREDKNCTIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSMKSEEINSTSSVR 260
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   196 KDLSYACREDKNCTIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSMKSEEINSTSSVR 260

  Fly   261 DVVVDRFLEAEQIGEQKSGDNAIPYLRVGQNSMIPSEYKGAVSHLCQMVNKQIYQLIEFARRLPN 325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   261 DVVVDRFLEAEQIGEQKSGDNAIPYLRVGQNSMIPSEYKGAVSHLCQMVNKQIYQLIEFARRLPN 325

  Fly   326 FSNLPREDQVTLLRSGWNEMLIASVAWRSMEYIETERPPDGRNDGRVTIRQPQLMCLGPNFTLHR 390
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   326 FSNLPREDQVTLLRSGWNEMLIASVAWRSMEYIETERPPDGRNDGRVTIRQPQLMCLGPNFTLHR 390

  Fly   391 NSAQQAGVDSLFDRILCELAIKMKRLDVNRAELGILKAIILFNSDIRGLKCRKEIDQMREKIYAC 455
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   391 NSAQQAGVDSLFDRILCELAIKMKRLDVNRAELGILKAIILFNSDIRGLKCRKEIDQMREKIYAC 455

  Fly   456 LDEYCKTQHPSEDGRFAQLLLRLPALRSISLKCIDHLNFLRLLGDKQLDNFIIEMLDTPL 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   456 LDEYCKTQHPSEDGRFAQLLLRLPALRSISLKCIDHLNFLRLLGDKQLDNFIIEMLDTPL 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc1NP_610955.1 None
Arc2NP_610956.1 Ty3_capsid 39..182 CDD:437091 142/142 (100%)

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