DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tej and Tdrd1

DIOPT Version :9

Sequence 1:NP_610950.2 Gene:tej / 36590 FlyBaseID:FBgn0033921 Length:559 Species:Drosophila melanogaster
Sequence 2:XP_038959137.1 Gene:Tdrd1 / 292129 RGDID:1306140 Length:1174 Species:Rattus norvegicus


Alignment Length:641 Identity:122/641 - (19%)
Similarity:210/641 - (32%) Gaps:214/641 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 CQKKSKNRGSHKPKYCYASEPSNLVFINESVSKMKNRKAPFPT--------------YQV---PR 138
            |::..:...|.:.....:|.|:.   ||..|...|..:...||              .||   |.
  Rat    62 CEQNKQYLASQEDNSVVSSNPAG---INGEVGGSKGDRKTLPTGNPVSLSLGNNSPPNQVKTKPS 123

  Fly   139 NLKLPVSYPNYNRLL---YPVHTPHIDQMISTGQQQST---------LRTQ--RPSFPCNANSKS 189
            |...|......::|.   ..|:.|.:...:....:.:|         ||..  :.::.|   |.:
  Rat   124 NAVTPEKSKKSHKLFENALSVNNPALFNSLGPPLRSTTCHRCGLFGSLRCSQCKQTYYC---STA 185

  Fly   190 LKVNDWSQKDRKQEPSK------ERNNQKYPKITTENKQEK------ETEELAQAFENL------ 236
            .:..|||.......|.:      |.|...:...|.:.|.|:      .|:|:....|.:      
  Rat   186 CQRRDWSSHSTICRPVQQSLHKLEDNKSPFETKTIDVKNEQVACPLGVTKEMTAGAERVMFSDLR 250

  Fly   237 ------SVDVAPT--------------------DHQEKLKCEIYEDNEDEFVRDPF--IYGEV-- 271
                  |:::..|                    ::..:|...:.|...:....|.:  :.|||  
  Rat   251 SLQLRKSMEIKGTVTEFKHPGHFYVQLYSSEVLEYMNQLSASLKETYANMVPEDGYLPVKGEVCV 315

  Fly   272 -KEKEDE----AVVLAFDAVSEDGFDLLSMTTTQQNA-----------VKPLD------------ 308
             |...|:    |||        :|.|:|     |:.|           :.|:|            
  Rat   316 AKYTVDQTWNRAVV--------EGVDVL-----QKKAHVLYIDYGNEEIIPVDRIHQLSRSISLF 367

  Fly   309 PP------------------EDCL---------HYAS---SDDGEDENAIPAYAV---------D 334
            ||                  |||:         .|.|   .|..|:|....|..|         |
  Rat   368 PPSAIKCYVSGVVPAAGEWTEDCVVAVKALLFEQYCSIKVVDISEEEGLTCAVDVVLQSSGKQLD 432

  Fly   335 HRVLDVDY------PRDAVRSAFTLPARD-----IESIIELQQRIRVQLVSLVNPHNFNFWIYND 388
            |.::::.|      |....:|.....:.|     .|:.|..::...|..|..:|        ..|
  Rat   433 HVLVEMGYGVKPDEPSSKKQSMDPGTSEDTGRLTAENRIGAERNALVPTVLTLN--------VGD 489

  Fly   389 DFKDYEAQFANMQTFY--------------ES-SESKNYTMPL--FLITTDHLCVVRCTSG--WE 434
            :|....|.....:.|:              || ||..::..|.  |..|...:|..:.:..  |.
  Rat   490 EFCGVVAHIQTPEDFFCQQLQSGHKLAELQESLSEYCSHVTPRSDFYPTIGDMCCAQFSEDDQWY 554

  Fly   435 RAKVLGYRSSNNKMTIEVELVDIGDIIRVSQQNVKFLIKPFALLPRQCLAGRLAFITQCKSPN-- 497
            ||.||.|.|..   ::.|..||.|:...:|.:.:..:|.....||.|.|...||.:    .|:  
  Rat   555 RASVLAYASEE---SVLVGYVDYGNFEILSLKRLCPIIPKLLDLPMQALNCVLAGV----KPSLG 612

  Fly   498 -WTAEVVNFFHDMILLRLLYAKVEAIKNNTAYLVLVDTESQGHTVNLNRSLIETGW 552
             ||.|.:......:..|::..:|..::...|.:.|||.....| ::.:::|:::|:
  Rat   613 MWTPEAICVMRKAVQNRMVTVRVVGMQGTRALVELVDKSVAPH-LSASKALLDSGF 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tejNP_610950.2 LOTUS_TDRD_OSKAR 7..93 CDD:193586 1/1 (100%)
TUDOR 379..488 CDD:278965 29/127 (23%)
Tdrd1XP_038959137.1 zf-MYND 162..198 CDD:396356 7/38 (18%)
Tudor_TDRD1_rpt1 262..391 CDD:410479 23/141 (16%)
Tudor_TDRD1_rpt2 512..593 CDD:410480 21/83 (25%)
TUDOR 709..825 CDD:395449
Tudor_SF 938..1053 CDD:413384
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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