DRSC/TRiP Functional Genomics Resources

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Protein Alignment shot and actn2b

DIOPT Version :10

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_001032662.2 Gene:actn2b / 641575 ZFINID:ZDB-GENE-051127-39 Length:895 Species:Danio rerio


Alignment Length:656 Identity:158/656 - (24%)
Similarity:259/656 - (39%) Gaps:171/656 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 RREISDIVVGKEDNVSAREALLRWARRSTARYPGVRVNDFTSSWRDGLAFSALVHRNRPDLLDWR 272
            |..|.||.|   :..||:|.||.|.:|.||.|..|.|.:|..||:||||..||:||:||||:|:.
Zfish   141 RFAIQDISV---EETSAKEGLLLWCQRKTAPYRNVNVQNFHVSWKDGLALCALIHRHRPDLIDYA 202

  Fly   273 KARNDRPRERLETAFHIVEKEYGVTRLLDPEDV-DTNEPDEKSLITYISSLYDVFPEPPSIHPL- 335
            |...|.|...|..||.|.||...:.::||.||: .|.:|||::::||:|..|..|......... 
Zfish   203 KLNKDDPLGNLNLAFDIAEKHLDIPKMLDAEDILSTPKPDERAIMTYVSCFYHAFAGAEQAETAA 267

  Fly   336 --------FDMESQRRVHEYRDLAQQFIYWCREKTAYLQERSFPPTLIEMKRLLSDLQRFRSDEV 392
                    .:.|:::.:.:|..||.:.:.|.|....:|:.|:...|::||:|.|.|.:.:     
Zfish   268 NRICKVLGVNQENEKLMEDYERLASELLEWIRRTIPWLENRAAEKTMVEMQRKLEDFRDY----- 327

  Fly   393 SARKREKSKLIQIYKELERYFETVGEVDVEAELRP----------DAIEKAWYRMNTALQDREVI 447
              |:..|...:|...:||..|.|: :..:....||          ..|..||..:..|.:..|..
Zfish   328 --RRMHKPPKVQEKCQLEISFNTL-QTKLRISNRPAFMPSEGKMVSDIASAWQGLEQAEKGYEEW 389

  Fly   448 LQQEIERLERLQRLADKV-QREIKH------VDQKLT--DLEGRIGEEGRRIERLHPVDAKSIVE 503
            |..||.||||::.||:|. |:...|      .::.||  |.|.....|.|.:.|.|        |
Zfish   390 LLTEIRRLERVEHLAEKFRQKATNHESWATGKEEMLTRKDYESASLMEVRALLRKH--------E 446

  Fly   504 ALETEIRHLEEPIQDMNQDCHVLNEGRYPHVSELHKKVNKLHQRWAQLRT--------------- 553
            |.|:::...::.::.:......|||..|..|:.::::...:...|..|.|               
Zfish   447 AFESDLSAHQDRVEQIAAIAQELNELDYHDVASVNQRCQSICDLWDHLGTLTQKRREALERTEKL 511

  Fly   554 -------------------NF--------------HT-----NLVQKLSGLKYPVHETTVTRQTR 580
                               |:              ||     .|:......|..:.|....||..
Zfish   512 LETVDQLFLEYAKRSAPFNNWMEGAMEDLQDMFIVHTIEEVQTLIAAHEQFKATLPEADAERQAI 576

  Fly   581 MVVESRQID-----------TNPHFRDLQEHIEWCQNKLKQLLAADYGSDLP----SVKEELDRQ 630
            :.::...:.           |||:.....|.|....:|:|:|        :|    :::|||.||
Zfish   577 LGIQQEVLKIFQSYGIRGDLTNPYSTITAEEIAIKWDKVKKL--------VPQRDSALQEELARQ 633

  Fly   631 QHEHKIIDQF-------------------HTKI-----LNDERQQTKFSGDELALYQQRLNQLQ- 670
            ....::..||                   |..:     |.|:..|.|.....:..|:..:::|: 
Zfish   634 HANERLRRQFAAQANLIGPWIQTRMEEIGHCSMAMGGTLEDQMTQLKQYEHVIVSYKSNIDRLEG 698

  Fly   671 --KVYAELLSTSTKRLSDLDSLQHFLGQASAELQW----------LNEKEQVEITRDWADKQLDL 723
              ::..|.|....|..:  .:::|      ..:.|          :||.|...:|||  .|.:..
Zfish   699 DHQLIQESLIFDNKHTN--YTMEH------VRVGWELLLTTIARTINEIETQILTRD--AKGISQ 753

  Fly   724 PSVHRY 729
            ..:|.:
Zfish   754 EQMHEF 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401 76/221 (34%)
CH_PLEC-like_rpt2 223..327 CDD:409038 49/104 (47%)
SPEC 471..689 CDD:238103 54/320 (17%)
SPEC 690..866 CDD:238103 10/50 (20%)
SH3_10 864..929 CDD:407754
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1980 CDD:459901
DUF5585 2860..>3198 CDD:465521
SMC_prok_B <4936..>5564 CDD:274008
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:413338
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:181619
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
FRQ1 <8375..8444 CDD:444056
GAS2 8450..8522 CDD:128539
PHA03307 8550..>8795 CDD:223039
actn2bNP_001032662.2 CH_ACTN_rpt1 36..140 CDD:409063
CH_ACTN_rpt2 144..258 CDD:409065 53/116 (46%)
Spectrin 282..391 CDD:395348 27/116 (23%)
SPEC 403..630 CDD:238103 42/242 (17%)
Spectrin 638..740 CDD:395348 16/109 (15%)
PTZ00184 748..>852 CDD:185504 2/12 (17%)
EFhand_Ca_insen 825..891 CDD:430177
Blue background indicates that the domain is not in the aligned region.

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