DRSC/TRiP Functional Genomics Resources

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Protein Alignment shot and actn4

DIOPT Version :10

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:XP_017951705.1 Gene:actn4 / 448522 XenbaseID:XB-GENE-494339 Length:926 Species:Xenopus tropicalis


Alignment Length:717 Identity:163/717 - (22%)
Similarity:289/717 - (40%) Gaps:167/717 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 RREISDIVVGKEDNVSAREALLRWARRSTARYPGVRVNDFTSSWRDGLAFSALVHRNRPDLLDWR 272
            |..|.||.|   :..||:|.||.|.:|.||.|..|.|.:|..||:|||||:||:||:||:|:::.
 Frog   145 RFAIQDISV---EETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYD 206

  Fly   273 KARNDRPRERLETAFHIVEKEYGVTRLLDPED-VDTNEPDEKSLITYISSLYDVFPEPPSIHP-- 334
            |.|.|.|...|..||.:.|:...:.::||.|| |:|..||||:::||:||.|..|........  
 Frog   207 KLRKDDPVTNLNNAFEVAERYLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAA 271

  Fly   335 -------LFDMESQRRVHEYRDLAQQFIYWCREKTAYLQERSFPPTLIEMKRLLSDLQRFRSDEV 392
                   ..:.|::..:.:|..||...:.|.|....:|:.|....|:.:|::.|.|.:.:|....
 Frog   272 NRICKVLAVNQENEHLMEDYEKLASDLLEWIRRTIPWLENRVPEKTMHDMQQKLEDFRDYRRVHK 336

  Fly   393 SARKREKSKLIQIYKELERYFETVGEVDVEAELRP----------DAIEKAWYRMNTALQDREVI 447
            ..:.:||.       :||..|.|: :..:....||          ..|...|..:..|.:..|..
 Frog   337 PPKVQEKC-------QLEINFNTL-QTKLRLSNRPAFMPSEGKMVSDINNGWQHLEQAEKGFEEW 393

  Fly   448 LQQEIERLERLQRLADKVQR---------EIKHVDQKLTDLEGRIGEEGRRIERLHPVDAKSIVE 503
            |...|.|||||..||:|.::         |.|....|..|.|.....:.:.:.|.|        |
 Frog   394 LLNAIRRLERLDHLAEKFRQKALIHEAWTEGKEAMLKQKDYESATLADIKALIRKH--------E 450

  Fly   504 ALETEIRHLEEPIQDMNQDCHVLNEGRYPHVSELHKKVNKLHQRWAQLRTNFHTNLVQKLSGLKY 568
            |.|:::...::.::.:......|||..|.....::.:..|:..:|..|.:..|            
 Frog   451 AFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDLLGSLTH------------ 503

  Fly   569 PVHETTVTRQTRMVVESRQIDTNPHFRDLQEHIEWCQNKLKQLLAADYGSDLPSVKEELDRQQHE 633
                   ||:..:.|..:|::...     |.::|:.:.      ||.:.:.:....|:|......
 Frog   504 -------TRREALEVTEKQLEAID-----QLYLEYAKR------AAPFNNWMEGAMEDLQDMFIV 550

  Fly   634 HKI---------IDQFHTKILNDERQQTKFSGDELALYQQRLNQLQKV--YAEL-------LSTS 680
            |.|         .:||.:.:.:.:|::....|.:        |:.||:  |:.:       .:|.
 Frog   551 HTIEEIEGLIAAHEQFKSTLPDADREREAILGIQ--------NEAQKIADYSHIKLASGNPYTTV 607

  Fly   681 TKRL--SDLDSLQHFLGQASAELQWLNEKEQ------------VEITRDWADKQLD-----LPSV 726
            |.::  |..:.:|..:.:....|:..::|:|            ..:...|...:::     ...:
 Frog   608 TPQIINSKWEKVQQLVPKRDGALKGEHDKQQSNEHLRLQFASLANVVGPWIQAKMEEIGRIAIEL 672

  Fly   727 HRYYENLMSELEKRE---MHFATILDRGEALLNQQHPASKCIEAHLTALQQQWAWLLQLTLCLEV 788
            |...|:.|:.|::.|   :::...:|:    |.|||.                  |:|..|..:.
 Frog   673 HGTLEDQMTHLKQYEQSVINYKPNIDK----LEQQHQ------------------LIQEALIFDN 715

  Fly   789 HLKHATEYHQFFGEIKDAEQW------LAK-RDEILNSKFSQSDFGLDQGETLLRGMQDLREELN 846
            ...:.|..|...|       |      :|: .:|:.|...::...|:.|.:     |.:.|...|
 Frog   716 KHTNYTMEHIRVG-------WEHLLTTIARTSNEVENQILTRDAKGISQEQ-----MHEYRASFN 768

  Fly   847 AF 848
            .|
 Frog   769 HF 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401 75/221 (34%)
CH_PLEC-like_rpt2 223..327 CDD:409038 50/104 (48%)
SPEC 471..689 CDD:238103 39/237 (16%)
SPEC 690..866 CDD:238103 31/186 (17%)
SH3_10 864..929 CDD:407754
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1980 CDD:459901
DUF5585 2860..>3198 CDD:465521
SMC_prok_B <4936..>5564 CDD:274008
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:413338
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:181619
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
FRQ1 <8375..8444 CDD:444056
GAS2 8450..8522 CDD:128539
PHA03307 8550..>8795 CDD:223039
actn4XP_017951705.1 CH_ACTN_rpt1 40..144 CDD:409063
CH_ACTN_rpt2 148..262 CDD:409065 54/116 (47%)
SPEC 289..510 CDD:238103 54/255 (21%)
SPEC 407..630 CDD:238103 45/268 (17%)
SPEC 522..747 CDD:238103 43/267 (16%)
PTZ00184 752..>883 CDD:185504 6/24 (25%)
EFhand_Ca_insen 856..922 CDD:430177
Blue background indicates that the domain is not in the aligned region.

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