DRSC/TRiP Functional Genomics Resources

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Protein Alignment Uba3 and Uba1

DIOPT Version :10

Sequence 1:NP_610913.1 Gene:Uba3 / 36539 FlyBaseID:FBgn0263697 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_001014102.1 Gene:Uba1 / 314432 RGDID:1359327 Length:1058 Species:Rattus norvegicus


Alignment Length:258 Identity:77/258 - (29%)
Similarity:126/258 - (48%) Gaps:47/258 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LEREGPFCKDG-FAASSENLEFLQTKCQVLIIGAGGLGCELLKDLALMGF-----GNLHVIDMDT 82
            |.|:..:  || .|....:|:....|.:..::|||.:||||||:.|::|.     |.:.|.||||
  Rat   445 LPRQNRY--DGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDT 507

  Fly    83 IELSNLNRQFLFRRTDIGASKAECAARFINARVPTCRVTPHFKKI-----QDFDESFYQQFHLVV 142
            ||.||||||||||..|:...|::.||..:....|..:||.|..::     :.:|:.|:|....|.
  Rat   508 IEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVA 572

  Fly   143 CGLDSIVARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILPGFTACIECTLDL 207
            ..||::.||.:::...:...:             |:::.||.|.|||.:|::|..|.....:.| 
  Rat   573 NALDNVDARMYMDRRCVYYRK-------------PLLESGTLGTKGNVQVVIPFLTESYSSSQD- 623

  Fly   208 FPPQVNYPLCTIANTPRLPEHCIEYVKIIQWEKQNPFGVPLDGDDPQHIGWIYERALERSNEF 270
             ||:.:.|:||:.|.|...||      .:||.:....|             ::::..|..|::
  Rat   624 -PPEKSIPICTLKNFPNAIEH------TLQWARDEFEG-------------LFKQPAENVNQY 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Uba3NP_610913.1 Uba3_RUB 50..346 CDD:238765 70/231 (30%)
E2_bind 357..442 CDD:462611
Uba1NP_001014102.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..46
Ube1 49..1055 CDD:273603 77/258 (30%)
2 approximate repeats. /evidence=ECO:0000255 63..611 60/180 (33%)
Blue background indicates that the domain is not in the aligned region.

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