DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mip120 and AT2G20110

DIOPT Version :10

Sequence 1:NP_001163143.1 Gene:mip120 / 36499 FlyBaseID:FBgn0033846 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_849995.1 Gene:AT2G20110 / 816530 AraportID:AT2G20110 Length:578 Species:Arabidopsis thaliana


Alignment Length:266 Identity:96/266 - (36%)
Similarity:130/266 - (48%) Gaps:55/266 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   611 GSNGAKYMICNSGVPQSS-TSAMRRGYTGYVENKTRRPPPISPQQHRFKQMGPQQQSKHQQLQAQ 674
            |..|.|:......|.|.| .||.:..:||          ..|..:|          |...|..:.
plant     4 GEEGDKFPPKTDEVTQESMKSARQLDFTG----------GSSDVEH----------SHSNQASSM 48

  Fly   675 AKQRIRQ------QQLPTEQSTPIKVEPKLPTLPP---GVKANVPAKPLFEVLKPPATAAAAGAV 730
            |...|..      :.:.|.|:.|....|..|  ||   |:..:||       ::.|...:.....
plant    49 AAASIPSPIVTVTRPIITSQAPPTVATPIPP--PPQSQGIILHVP-------IRHPRPESPNSMP 104

  Fly   731 DPLG----GMTSRRKHCNCSKSQCLKLYCDCFANGEFCQDCTCKDCFNNLDYEVERERAIRSCLD 791
            .|.|    |...::|.|||..|:||||||:|||:|.:|..|.|.:||||::.|..|.:|:.|.|:
plant   105 RPAGETRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVENEPARRQAVESTLE 169

  Fly   792 RNPSAFKPKITA-PNSG-DMR----------LHNKGCNCKRSGCLKNYCECYEAKIPCSSICKCV 844
            |||:||:|||.| |:.| |.|          .|||||:||:|||||.||||::|.|.||..|||:
plant   170 RNPNAFRPKIAASPHGGRDNREEVGDVVMLARHNKGCHCKKSGCLKKYCECFQANILCSENCKCL 234

  Fly   845 GCRNME 850
            .|:|.|
plant   235 DCKNFE 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mip120NP_001163143.1 TCR 740..775 CDD:461001 20/34 (59%)
TCR 813..850 CDD:461001 24/36 (67%)
AT2G20110NP_849995.1 TCR 118..154 CDD:461001 21/35 (60%)
TCR 203..238 CDD:461001 23/34 (68%)

Return to query results.
Submit another query.