DRSC/TRiP Functional Genomics Resources

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Protein Alignment cbc and GRC3

DIOPT Version :10

Sequence 1:NP_610876.1 Gene:cbc / 36494 FlyBaseID:FBgn0033842 Length:423 Species:Drosophila melanogaster
Sequence 2:NP_013065.1 Gene:GRC3 / 850624 SGDID:S000003958 Length:632 Species:Saccharomyces cerevisiae


Alignment Length:454 Identity:87/454 - (19%)
Similarity:159/454 - (35%) Gaps:122/454 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 CVLHV----------SGKM--DVCYISKET----PMVQYVNCHAALEQFRME------------- 101
            |||.|          :|.:  ||.|:.|..    |:.:....|...|..|::             
Yeast   163 CVLRVFNSNHTGLLEAGHLYRDVNYLWKPKEPYFPLNERTTYHLLHESDRIQSLSVPGYWSTPLE 227

  Fly   102 ----AEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGR-------RPLYADLDVGQGSIAIS 155
                :.:...|....||:|..:.||||..|:||....:..|       ..:|.|||.||...::.
Yeast   228 KLYLSHKNAAYDTRIMVIGGKNSGKSTFLRLLLEKFTQDIRDSTTSQEELVYLDLDPGQPEYSLP 292

  Fly   156 GSVA-TILIERPANVEEGFAKTAP----LVYHFGHKSPSGNSVLYNAVVSKMAEVTLQSLNSNKR 215
            .|:: ..::..|.::.:...:.:.    |.::.|..||......|.....|:.:      :..::
Yeast   293 DSISLNKILSSPISLGQHLCQGSNFQTLLQFYAGSSSPQDEPTSYLNCADKLID------HLEEQ 351

  Fly   216 TKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIFVLD---QERLYNEL---------LRD--VP 266
            ......::|..||:||.|...|.|..:.|....:..|:   .:|..:||         |||  .|
Yeast   352 AFFGTSLLNLPGWIKGFGMQILNHIIRKYKPTHLLFLETANSKRHLDELTIPQSFSTSLRDAYAP 416

  Fly   267 KGVHVVLLPKSGGVVERSKELRH---------EARDQRIKEYF---------------------- 300
            :   ||.:|        :..|.|         :.|..:|...|                      
Yeast   417 E---VVRVP--------AHSLNHTLSSRFHASQLRTFKILALFHKITQFDYDFAPLLKSAPLQIS 470

  Fly   301 YGNTRAPFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPAL------IH 359
            ||..::......|.::||||....|.: .|..:.:.|...:.::..:|.::...|.|      ..
Yeast   471 YGKGKSGIKGIQFPMEFQDLNPQDIKS-ALEGTVIGIYTYSGEDSLEVKSLNTFPILQSCTSSSK 534

  Fly   360 HVLALSFAESVEDDVIGTNVAGFCCVTEV----DMERQAVMLLSPQPRP----LPPNALLLWSE 415
            :.:.|....|::......|:....|.|::    ..:.|.:::.:....|    ||....:.|.:
Yeast   535 NFITLGLIHSIDTSQQIMNIYVPPCHTQILDKQPEDAQWIIVRNKTETPFCDFLPSPRTITWDD 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbcNP_610876.1 CLP1 11..412 CDD:227910 86/449 (19%)
CLP1_P 116..301 CDD:406878 48/241 (20%)
GRC3NP_013065.1 CLP1_P 246..449 CDD:406878 47/219 (21%)

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