DRSC/TRiP Functional Genomics Resources

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Protein Alignment cbc and clp1

DIOPT Version :10

Sequence 1:NP_610876.1 Gene:cbc / 36494 FlyBaseID:FBgn0033842 Length:423 Species:Drosophila melanogaster
Sequence 2:NP_001333167.1 Gene:clp1 / 565621 ZFINID:ZDB-GENE-030131-5306 Length:443 Species:Danio rerio


Alignment Length:423 Identity:223/423 - (52%)
Similarity:305/423 - (72%) Gaps:13/423 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGCVLHV 70
            |..:.|:.::|||||:|..: :|.:.|:||.||:||:||.:.|:|.||.|:|:|:||:|||.:.:
Zfish    24 GTRFDLDKETELRFEVEAGE-RVQLELLSGLAEIFGSELNRNKKYTFGPGSKIAVFTWQGCGVAL 87

  Fly    71 SGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVR 135
            |||.:|.|:||:|||:.|:|.||||||.|.:||:.:..||..|||||.||||||:||:|||||||
Zfish    88 SGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAEKDNERGPRVMVVGPTDVGKSTVCRMLLNYAVR 152

  Fly   136 VGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS 200
            :||||...:|||||.|:::.|:::.:.|||||:|||||:..||||:|||..:|..|..|||.:.|
Zfish   153 LGRRPTLVELDVGQSSVSVPGTMSALCIERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTS 217

  Fly   201 KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIFVLDQERLYNELLRDV 265
            .:|:...|....|:|....|.|||||||||||||..|:|.|.|:....:.|||||||||||.||:
Zfish   218 SLADAFSQRCEVNRRASVGGCIINTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDL 282

  Fly   266 PKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNTRAPFYPFSFEVKFQDLRLYKIGAPPL 330
            |..|.|||||||||||||||:.|.|.||::|:|||||.....|||.:|:|:|.|:|:||||||.:
Zfish   283 PHFVRVVLLPKSGGVVERSKDCRRETRDEKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSI 347

  Fly   331 PDSCMPIGMKAEDNKTKVVAVTPTPALIHHVLALSFAESVEDD--------VIGTNVAGFCCVTE 387
            ||||:|:||..:|.:.|:|.|:|...|.||||::|   ||:|:        ::.:...||..||.
Zfish   348 PDSCLPLGMSQDDTQLKLVPVSPGRDLTHHVLSVS---SVDDEAEVGQSRGILESPACGFIVVTA 409

  Fly   388 VDMERQAVMLLSPQPRPLPPNALLLWSELQFMD 420
            ||.:.|.:.:|||.|||||.:.||: .:::|:|
Zfish   410 VDTQAQVMTVLSPAPRPLPRHTLLI-MDIRFID 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbcNP_610876.1 CLP1 11..412 CDD:227910 219/408 (54%)
CLP1_P 116..301 CDD:406878 110/184 (60%)
clp1NP_001333167.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 1/2 (50%)
CLP1 29..441 CDD:227910 221/416 (53%)
CLP1_P 133..318 CDD:406878 110/184 (60%)

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