DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sug and Glis3

DIOPT Version :10

Sequence 1:NP_610826.1 Gene:sug / 36424 FlyBaseID:FBgn0033782 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001419411.1 Gene:Glis3 / 680671 RGDID:1565505 Length:929 Species:Rattus norvegicus


Alignment Length:363 Identity:120/363 - (33%)
Similarity:152/363 - (41%) Gaps:103/363 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PPLGYFTPYNTPPYIAAYSDSGSWLADHHQHHQQQHQQHQQQMQHIRFPTPPITPPRPIAGYGYR 85
            |||....|...||                .:|...|..|.:.:.|                    
  Rat   448 PPLPLPPPQGPPP----------------PYHAHPHLHHPELLPH-------------------- 476

  Fly    86 QRTQSVIMKARGQQDELCRSPVEFPDDSKSCSSSSECGTASDFVCNWTDCDRVFDTLDALAQHVT 150
              |||:.:...|.::          |.....|....|       |.|.||..::|..:.|.:|:.
  Rat   477 --TQSLPLAQAGLEE----------DGELEDSGGKHC-------CRWIDCSALYDQQEELVRHIE 522

  Fly   151 QRHAIASLTDGLYYCRWRGCQRSERGFNARYKMLVHTRTHTKEKPHRCHL--CEKSFSRAENLKI 213
            :.| |.......:.|.|.||.|..:.||||||:|:|.|.|:.|||::|..  |:|:|||.|||||
  Rat   523 KVH-IDQRKGEDFTCFWTGCPRRYKPFNARYKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKI 586

  Fly   214 HIRSHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTHSMEKPYMCKVAGCQKRYTDPSSLRKHVKTF 278
            |:|||:|||||.|...|||||:||||||.||.|||...|||.|::.||.||||||||||||||. 
  Rat   587 HLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKA- 650

  Fly   279 KHS---------------IH------LIASQPL---TLP-------------------SVPCLLE 300
             ||               :|      .:|.|||   |.|                   |.|....
  Rat   651 -HSSKEQQARKKLRSSTELHPDLLTDCLAVQPLQPATSPRDAADRTVGHSPGPGPELYSAPIFAS 714

  Fly   301 ASSESAFTCLPAASSVESTSSSSSARYYDDSNNEPSDY 338
            ..|..:.|...|.......|..|.......|.:.||.:
  Rat   715 NHSTRSGTAAGAVPPPHPVSHPSPGHNVQGSPHNPSSH 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sugNP_610826.1 C2H2 Zn finger 170..190 CDD:275368 11/19 (58%)
COG5048 192..>271 CDD:227381 53/80 (66%)
C2H2 Zn finger 198..218 CDD:275368 13/21 (62%)
C2H2 Zn finger 226..248 CDD:275368 15/21 (71%)
C2H2 Zn finger 256..277 CDD:275368 16/20 (80%)
Glis3NP_001419411.1 C2H2 Zn finger 506..525 CDD:275368 5/18 (28%)
C2H2 Zn finger 536..561 CDD:275368 14/24 (58%)
COG5048 539..>839 CDD:227381 92/216 (43%)
SFP1 <558..652 CDD:227516 62/95 (65%)
C2H2 Zn finger 569..591 CDD:275368 13/21 (62%)
C2H2 Zn finger 599..621 CDD:275368 15/21 (71%)
C2H2 Zn finger 629..651 CDD:275368 17/23 (74%)

Return to query results.
Submit another query.