DRSC/TRiP Functional Genomics Resources

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Protein Alignment sug and Zic3

DIOPT Version :10

Sequence 1:NP_610826.1 Gene:sug / 36424 FlyBaseID:FBgn0033782 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001398746.1 Gene:Zic3 / 367944 RGDID:1561261 Length:466 Species:Rattus norvegicus


Alignment Length:422 Identity:122/422 - (28%)
Similarity:170/422 - (40%) Gaps:133/422 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 AAYSDSGSWLAD---HHQHHQQQHQQHQQQM---------------------------------- 63
            :|::..||..|:   ||.||  .|..|..|:                                  
  Rat    72 SAFTPQGSGYANALGHHHHH--HHHHHASQVPTYGGAASAAFNSTRDFLFRQRGSGLSEAASGGG 134

  Fly    64 QHIRF-------------PTPP---ITPPRPIAGYGYRQRT-----QSVIMKARGQ--------- 98
            ||..|             |.||   :.|.....|.|:...|     ..|.:..||:         
  Rat   135 QHGLFAGSASSLHAPAGIPEPPSYLLFPGLHEQGAGHPSPTGHVDNNQVHLGLRGELFGRADPYR 199

  Fly    99 -----QDELCRSPVEFPDDS-----KSCSSSSECGTASDF-----------VCNWTD-------- 134
                 :.:...:..:||:.|     ...:.::..|..:.|           .|.|.:        
  Rat   200 PVASPRTDPYAASAQFPNYSPMNMNMGVNVAAHHGPGAFFRYMRQPIKQELSCKWIEEAQLSRPK 264

  Fly   135 --CDRVFDTLDALAQHVTQRHAIASLTDGLYYCRWRGCQRSERGFNARYKMLVHTRTHTKEKPHR 197
              |||.|.|:..|..|||..| :.......:.|.|..|.|..:.|.|:||::.|.|.||.|||..
  Rat   265 KSCDRTFSTMHELVTHVTMEH-VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP 328

  Fly   198 CHL--CEKSFSRAENLKIHIRSHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTHSMEKPYMCKVAG 260
            |..  |.|.|:|:||||||.|:|:||||:||.||||.:.::|||||.||...|:.:|||:|||  
  Rat   329 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYICKV-- 391

  Fly   261 CQKRYTDPSSLRKHVKTFKHSIHLIASQPLTLPSVPCLLEASSESAFTCLPAASS--VESTSSSS 323
            |.|.||.|||||||:|     :|  .||             .|:|:    |||||  ..||..:.
  Rat   392 CDKSYTHPSSLRKHMK-----VH--ESQ-------------GSDSS----PAASSGYESSTPPAI 432

  Fly   324 SARYYDDSNNEPSDYSLKPKQDAEFSPSY--W 353
            ::....|:...||........:....|::  |
  Rat   433 ASANSKDTTKTPSAVQTSTSHNPGLPPNFNEW 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sugNP_610826.1 C2H2 Zn finger 170..190 CDD:275368 8/19 (42%)
COG5048 192..>271 CDD:227381 46/80 (58%)
C2H2 Zn finger 198..218 CDD:275368 12/21 (57%)
C2H2 Zn finger 226..248 CDD:275368 12/21 (57%)
C2H2 Zn finger 256..277 CDD:275368 14/20 (70%)
Zic3NP_001398746.1 zf_ZIC 244..289 CDD:436441 12/45 (27%)
C2H2 Zn finger 301..321 CDD:275368 8/19 (42%)
SFP1 <323..407 CDD:227516 51/85 (60%)
C2H2 Zn finger 329..351 CDD:275368 12/21 (57%)
C2H2 Zn finger 359..381 CDD:275368 12/21 (57%)
C2H2 Zn finger 389..409 CDD:275368 15/26 (58%)

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