DRSC/TRiP Functional Genomics Resources

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Protein Alignment spt4 and SPT42

DIOPT Version :10

Sequence 1:NP_610802.1 Gene:spt4 / 36387 FlyBaseID:FBgn0028683 Length:116 Species:Drosophila melanogaster
Sequence 2:NP_568976.1 Gene:SPT42 / 836487 AraportID:AT5G63670 Length:116 Species:Arabidopsis thaliana


Alignment Length:83 Identity:38/83 - (45%)
Similarity:57/83 - (68%) Gaps:1/83 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRL 77
            |||||.|.|||::|||...||||| .|.:|:.:.:.:.:.|:.||:|||::..|:.||.|:|.|:
plant    16 LRACLRCRLVKTYDQFRDAGCENC-PFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRI 79

  Fly    78 SRFTRGIYAISVSGTLPQ 95
            .:|..|.|.::||..||:
plant    80 GKFAPGCYTLAVSEPLPE 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spt4NP_610802.1 Spt4 11..108 CDD:153422 38/83 (46%)
SPT42NP_568976.1 Spt4 14..110 CDD:153422 38/83 (46%)

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