DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8850 and slc6a1b

DIOPT Version :10

Sequence 1:NP_725122.2 Gene:CG8850 / 36331 FlyBaseID:FBgn0033708 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001007363.1 Gene:slc6a1b / 492490 ZFINID:ZDB-GENE-041114-57 Length:600 Species:Danio rerio


Alignment Length:634 Identity:209/634 - (32%)
Similarity:323/634 - (50%) Gaps:81/634 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GAQGSREGH--------PGSNDGISTVIYSAEGEELTINCEAESESSGQRDQWSRGVEFLFSCIA 72
            |.:.| :||        |.:||...|::...:          :.:....|:.|....:||.||:.
Zfish     5 GTKAS-DGHVLTEVNEAPTANDKPKTLVVKVQ----------KKKELPDRETWQGKFDFLLSCVG 58

  Fly    73 LSVGLGNVWRFPFIALENGGGAFLIPYVIVLLLIGRPVYYLEVIIGQFSSRGCIRAFDMAPIMRG 137
            .::|||||||||::..:||||||||||.:.|:..|.|:::||..:||::|.|.:..:.:||:.:|
Zfish    59 YAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFFLETALGQYTSIGGLGVWKLAPMFKG 123

  Fly   138 IAYGQVYSTALATTYYACIMALTIRYLVASFSEVLPWTYCLVEWGKSCVATGATAANDSSIVQGV 202
            :.......:.....||..|:|..|.||..||:..|||..|...|......:..:.||    :..:
Zfish   124 VGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTTDLPWKSCDNPWNTDKCFSNYSMAN----IGNM 184

  Fly   203 SSAELFFTQTVLREPESLDDNGLGTPS---WDLVLCLLATWVIIGTILSKGIRSSGKASYFLALF 264
            :||.:.|.:   |....|.| ||..|.   ..|.:.|...||::...:.||:..:||..||.|.:
Zfish   185 TSAVVEFWE---RNMHQLTD-GLEKPGEIRLPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATY 245

  Fly   265 PYVIMIVLLIRAVTLPGAWQGIVYFLKPQWSQLLNPHVWYAAITQMFFSLAICFGTLVMYASFND 329
            ||.::.:|.||.||||||.:||::::.|::|:|....||..|.||:|||..:..|:|:...|:|.
Zfish   246 PYFMLFILFIRGVTLPGAKEGILFYVTPEFSKLKESEVWLDAATQIFFSYGLGLGSLIALGSYNP 310

  Fly   330 FNKNVHKDVIIITTIDSLTSILAGCIIFGILGNLAFETNTKDISQVVKGGAGLAFISYPEAIAKF 394
            ||.||:||.||:..|:|.||:.||.:||.|:|.:|..|. :.|:.|...|.||||::||||:.:.
Zfish   311 FNNNVYKDSIIVCCINSFTSMFAGFVIFSIVGFMAHITK-RPIADVAASGPGLAFLAYPEAVTQL 374

  Fly   395 KYLPQLFAVLFFFMLLVLGIGSNIGMASAVVNVVKDRFTHLPHWL-------LAVSASIIGFLCG 452
            ...| |:|||||.|||:|||.|........:..:.|.|   |..|       :|| ..::.:|.|
Zfish   375 PISP-LWAVLFFSMLLMLGIDSQFCTVEGFITALVDEF---PRALRGRREIFIAV-VCLVSYLIG 434

  Fly   453 LVYMTPGGQFVLNLVDFYGCTFIALV-LAIAELLAVGWIYGVKRICSDIEFMLNVKTSFYWRICW 516
            |..:|.||.:|..|.|:|..:.:.|: |...|.:::.|.|||.:...::|.|:..|...:|::||
Zfish   435 LSNITQGGLYVFKLFDYYSASGMCLLFLVFFECVSISWFYGVNKFYGNLEEMIGYKPCIWWKLCW 499

  Fly   517 AIVAPGLMFLVLVYMLFSYEPLTYRGVQYPPVYYMAGWIIWGLGVLQLPFW--ALVTIYQQPG-- 577
            .:..|.::..|.::......|||.....:|.         ||.||    .|  ||.::...||  
Zfish   500 VVFTPLIVAGVFLFSAVQMVPLTLNNYVFPK---------WGQGV----GWCMALSSMVLIPGYM 551

  Fly   578 --------KTFGSKFGLAMQPTA------NWGPLQTQK------FEAYI 606
                    .::..:..:.:||||      ..||.|..:      .||||
Zfish   552 GYMFLTLKGSYKERLRIMIQPTAAAVRTQENGPEQQPENPTPANDEAYI 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8850NP_725122.2 SLC6sbd 58..532 CDD:271359 176/484 (36%)
slc6a1bNP_001007363.1 SLC5-6-like_sbd 2..600 CDD:444915 207/632 (33%)

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