DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and ELC1

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_015279.1 Gene:ELC1 SGDID:S000005967 Length:99 Species:Saccharomyces cerevisiae

Alignment Length:107 Identity:28/108 (26%)
Similarity:50/108 (46%) Gaps:13/108 (12%)


  Fly     4 IRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNSLILKKVLHWATYHKDDPV 68
            :.|.|.|.:.::..:..|..|.|::..||....||...: .|...:|.||:|.:.:..|:.....
Yeast     6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRI-ELKQFDSHILEKAVEYLNYNLKYSG 69

  Fly    69 VTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYLNI 110
            |:|:       .|:|..::     :......||:|||:||:|
Yeast    70 VSED-------DDEIPEFE-----IPTEMSLELLLAADYLSI 99

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 28/108 (26%)
Skp1 1..110 CDD:214704 27/106 (25%)
Skp1 84..158 CDD:279768 8/28 (29%)
ELC1NP_015279.1 Skp1 3..99 CDD:214704 27/106 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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