DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and SK18

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_563864.2 Gene:SK18 AraportID:AT1G10230 Length:158 Species:Arabidopsis thaliana

Alignment Length:155 Identity:66/156 (42%)
Similarity:97/156 (62%) Gaps:7/156 (4%)


  Fly     4 IRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNSLILKKVLHWATYHKDDPV 68
            |.|.|:|.|.|:.|:.:|:   ...|.:..:.|......:||.||...||.|::.:|..|.::|.
plant     6 ILLTSSDGESFEIDEAVAR---KFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPS 67

  Fly    69 VTEEVENKEKRTDDISSWDADFL-KVDQGTLFELILAANYLNIQGLLDVTCKTVANMIKGKSPQA 132
            ..:|.|..:|..|   ||||.|: |:|..|:|::||||||||.:|||....:|||:.||.|:|:.
plant    68 EEDEDEEAKKNLD---SWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEE 129

  Fly   133 IRDTFAIQNDFLPQEEEQVRKENEW 157
            :|:.|.|:|||.|:|||::||||.|
plant   130 VREIFNIENDFTPEEEEEIRKENAW 154

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 66/156 (42%)
Skp1 1..110 CDD:214704 41/107 (38%)
Skp1 84..158 CDD:279768 42/76 (55%)
SK18NP_563864.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1412723at2759
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11165
Phylome 1 0.910 0.738 Consistency score
33.020

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