DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and SK21

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_567113.1 Gene:SK21 AraportID:AT3G61415 Length:351 Species:Arabidopsis thaliana

Alignment Length:163 Identity:48/164 (29%)
Similarity:82/164 (50%) Gaps:22/164 (13%)


  Fly     4 IRLESADKEIFDTDQEIAK-----CSETIRIAIEDLGDESDNSVLPLP-NVNSLILKKVLHWATY 62
            |.||:||..|...:||:|.     |.|.|:..:    ..|.|..:.|| .||..:|..:..:..:
plant    18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGV----GSSKNYAISLPQRVNPAMLSLIFDYCRF 78

  Fly    63 HKDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYLNIQGLLDVTCKTVANMIKG 127
            |:     .....|||::.     :|..|:::|...|.||..||:.|.::.|:|:|.:.:|.:|:|
plant    79 HQ-----VPGRSNKERKV-----YDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEG 133

  Fly   128 KSPQAIRDTFAIQNDFLPQEEEQVRKENEWCED 160
            |:|:.||:.|.:.:|.  .|||::.......:|
plant   134 KTPEEIREIFHLPDDL--TEEEKLEPLKNTMDD 164

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 48/164 (29%)
Skp1 1..110 CDD:214704 32/112 (29%)
Skp1 84..158 CDD:279768 24/74 (32%)
SK21NP_567113.1 Skp1 15..116 CDD:214704 32/112 (29%)
Skp1 90..153 CDD:279768 23/70 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11165
Phylome 1 0.910 0.667 Consistency score
22.010

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