DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and skp1

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_001016519.1 Gene:skp1 XenbaseID:XB-GENE-919631 Length:163 Species:Xenopus tropicalis

Alignment Length:163 Identity:113/164 (69%)
Similarity:134/164 (82%) Gaps:2/164 (1%)


  Fly     1 MPIIRLESADKEIFDTDQEIAKCSETIRIAIEDLG--DESDNSVLPLPNVNSLILKKVLHWATYH 63
            ||.|:|:|:|.|||:.|.||||.|.||:..:||||  ||.|:..:||||||:.|||||:.|.|:|
 Frog     1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65

  Fly    64 KDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYLNIQGLLDVTCKTVANMIKGK 128
            ||||...|:.||||||||||..||.:|||||||||||||||||||:|:|||||||||||||||||
 Frog    66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 130

  Fly   129 SPQAIRDTFAIQNDFLPQEEEQVRKENEWCEDK 161
            :|:.||.||.|:|||..:||.||||||:|||:|
 Frog   131 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 112/162 (69%)
Skp1 1..110 CDD:214704 74/111 (67%)
Skp1 84..158 CDD:279768 57/74 (77%)
skp1NP_001016519.1 BTB_POZ_SKP1 4..127 CDD:349631 86/123 (70%)
Skp1 113..160 CDD:334550 35/47 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C232048337
eggNOG 1 0.900 E1_COG5201
Hieranoid 1 1.000
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1412723at2759
OrthoFinder 1 1.000 FOG0000898
OrthoInspector 1 1.000 T600627
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 1 0.960
87.710

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