DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and SPBC1861.07

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_596724.1 Gene:SPBC1861.07 PomBaseID:SPBC1861.07 Length:97 Species:Schizosaccharomyces pombe

Alignment Length:106 Identity:29/107 (27%)
Similarity:49/107 (46%) Gaps:17/107 (16%)


  Fly     4 IRLESADKEIFDTDQEIAKCSETIR-IAIEDLGDESDNSVLPLPNVNSLILKKVLHWATYHKDDP 67
            :||.|.|..:|..::|||..|.||| |..|.:..|:..:....|::.:.:|:||..:..|:    
pombe     6 VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHYN---- 66

  Fly    68 VVTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYL 108
                   .:.|...||..:|     :....:.||::.|.||
pombe    67 -------YRYKNQLDIPKFD-----IPPEMVLELLVTAEYL 95

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 29/107 (27%)
Skp1 1..110 CDD:214704 29/107 (27%)
Skp1 84..158 CDD:279768 6/26 (23%)
SPBC1861.07NP_596724.1 Skp1 3..96 CDD:214704 29/107 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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